PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019193966.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 749aa MW: 86300.1 Da PI: 7.4727

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019193966.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86.5	4.1e-27	28	114	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+eYAk+vGF + k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+++vk++++gkw+++++++eHnH+l p XP_019193966.1 28 EFYKEYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRRQNGKWYIHSFVKEHNHDLLP 114 6**************************************999877....9**********************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 749 aa Download sequence
MESSVVAGSS NLEPRDDMEF DSHEAAYEFY KEYAKSVGFG TAKLSSRRSR ASKEFIDAKF 60 SCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRRQNGKWY IHSFVKEHNH DLLPAQVHLF 120 RSHRNGDPLK NDPKIRRKKA LAAVSNHYGG TYQFSSCLEN VFRSQHDRGR NLALEEGDAQ 180 MLLELFVHMQ EENPEFFYAI DLNEEHRLRN VFWVDAKGMK DYANFGDVVS LDISYFSNKY 240 KIPLVFFVGA NNHIQPTLLG CALIVDESVH TFLWLLRTWC LAMGGRGPRV LLTDQNNAIK 300 AAVSAVLPNT HHYFSLWCIL EKIPRYLDYL SLWHDPFIAK FRKCIHMSWT EEQFEKRWWK 360 LLDRFNLRED EWIQSLHEDR KRWVPTFIRD VSFAGLSTAS RAESMNSLLD KYINGETSLR 420 EFIGKYKLIL EDRYEEEAKA NFDAWHETAE LKSPSPFEKQ LSLIYTHEIF KKFQVEVLGV 480 AACHLRKEKD DTTMTYAVKD IENDQDFMVE WTESKSEIFC SCHLFEYKGF LCRHAIVVLQ 540 MSGVFRIPIK YILQRWSNIA KSRLPISERL DEVQAKVRCY NDLCRRAIIL GEEGSLSQES 600 YNIAVSAIKE AIRQCATVNG PIQTDLRPPP GMPATLAIQG VEEANHRSTA VAREQVSNIK 660 VTQTSRGSKR VDSGNEKESN ESCANKKGKV PLEPEVTNLG TQGVFHQMDM PGSLDYPTYY 720 PRFLTTLLRG GEINKRNVEL LGEMLEEQS

Sequence ? help Back to Top

Protein Sequence Length: 749 aa Download sequence

MESSVVAGSS NLEPRDDMEF DSHEAAYEFY KEYAKSVGFG TAKLSSRRSR ASKEFIDAKF  60
SCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRRQNGKWY IHSFVKEHNH DLLPAQVHLF  120
RSHRNGDPLK NDPKIRRKKA LAAVSNHYGG TYQFSSCLEN VFRSQHDRGR NLALEEGDAQ  180
MLLELFVHMQ EENPEFFYAI DLNEEHRLRN VFWVDAKGMK DYANFGDVVS LDISYFSNKY  240
KIPLVFFVGA NNHIQPTLLG CALIVDESVH TFLWLLRTWC LAMGGRGPRV LLTDQNNAIK  300
AAVSAVLPNT HHYFSLWCIL EKIPRYLDYL SLWHDPFIAK FRKCIHMSWT EEQFEKRWWK  360
LLDRFNLRED EWIQSLHEDR KRWVPTFIRD VSFAGLSTAS RAESMNSLLD KYINGETSLR  420
EFIGKYKLIL EDRYEEEAKA NFDAWHETAE LKSPSPFEKQ LSLIYTHEIF KKFQVEVLGV  480
AACHLRKEKD DTTMTYAVKD IENDQDFMVE WTESKSEIFC SCHLFEYKGF LCRHAIVVLQ  540
MSGVFRIPIK YILQRWSNIA KSRLPISERL DEVQAKVRCY NDLCRRAIIL GEEGSLSQES  600
YNIAVSAIKE AIRQCATVNG PIQTDLRPPP GMPATLAIQG VEEANHRSTA VAREQVSNIK  660
VTQTSRGSKR VDSGNEKESN ESCANKKGKV PLEPEVTNLG TQGVFHQMDM PGSLDYPTYY  720
PRFLTTLLRG GEINKRNVEL LGEMLEEQS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	0.0	FAR1 family protein