PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019193939.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

SBP

Protein Properties

Length: 185aa MW: 20468.9 Da PI: 10.1655

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019193939.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	133.7	5.9e-42	55	130	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cq+e+C+adl eak+yhrrhkvCe+h+ka+vv+v+gl+qrfCqqCsrfhel efDe+krsCrrrLa+hnerrrk++ XP_019193939.1 55 CQAEKCSADLHEAKQYHRRHKVCEFHAKAQVVVVAGLRQRFCQQCSRFHELGEFDEAKRSCRRRLAGHNERRRKSS 130 **************************************************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence
MSSKVVLKRE AMEGDAAAGE RESPSSAISA DDEKKKRGGK KGGGGNNGGP VMRSCQAEKC 60 SADLHEAKQY HRRHKVCEFH AKAQVVVVAG LRQRFCQQCS RFHELGEFDE AKRSCRRRLA 120 GHNERRRKSS AISSESSQAA EAVAASSSTR NQYLKDINVC GQVDDKGRIQ MSIQENSSFK 180 HFQIR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	38	45	GGKKGGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53160.1	6e-41	SBP family protein