PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019193885.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 324aa    MW: 35967.6 Da    PI: 9.0296
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019193885.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR157.35.3e-1861157291
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                      Y +YA+ +GF+vr s+ k+  r g i++r +vCs++g +   ++         +++err+r ++r++C a++   k+ +gk++vt ++++H+H+
  XP_019193885.1  61 HYTNYARIMGFDVRCSSVKRD-RAGVIYSRYLVCSRQGVKGGGTTLharvdggeAKRERRRRLSNRVNCGARIGFIKKGSGKFVVTVFVEKHTHK 154
                     69**************99987.8889*************998777689999*99999******************9999**************** PP

            FAR1  89 lap 91 
                     l++
  XP_019193885.1 155 LCS 157
                     *85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    
MGDSNASASL GDRAVIPEAE AIDGFTAGLP SEDQQWTHAV DVSVLPAVGR VFNTLNEGIQ  60
HYTNYARIMG FDVRCSSVKR DRAGVIYSRY LVCSRQGVKG GGTTLHARVD GGEAKRERRR  120
RLSNRVNCGA RIGFIKKGSG KFVVTVFVEK HTHKLCSESS KLFLRINRRL DVAKQAFLGN  180
CIKANIGAST GLRFCKEATG SYANVGATDV EFHNFKRDVQ TYVDVADGEM IIATFKAKHE  240
VCNEFFFDYH LDEENRLTRL FWADPLGRRT FTCYGDTISF DATYGTNRYS MVFVPFTGST  300
TTNDASLLGP DSSQRRMLIH TAGY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-26FAR1 family protein