PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019193875.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 502aa MW: 54727.9 Da PI: 6.8621

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019193875.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51.2	2.2e-16	326	372	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+ellP++ K +Ka++L +A+eY+ksLq XP_019193875.1 326 VHNLSERRRRDRINEKMRALQELLPHS-----NKTDKASMLDEAIEYLKSLQ 372 6***********************7.....5****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence
MNPCLPEWNI EAEVPLANQK KPVGLDHDLV ELLWRNGQVV LHSQTHRKSG FEGNESRQLQ 60 KHDQSSLRDV SLFGNPPSFI QDDETTSWLN CPVDDSFEKE FCAPFLSEIP SVHHPVGTDK 120 GGIRQVEDSK IIKLGSSDSG VNLNPMPPPG TQTLSSLHQR RDCNLPEGGV SFGASLKANL 180 RSSNGQFGAK GHGDIRECSG MTVGSSHCGS NQVAIDAAFS RNSCSGNGDR GLSAAVNKGY 240 VEKVSPQTET AEEETAGTSS SGRSGSSFAR TCNQSAGTIS HGQKRKLRDG EESESQREEA 300 AEFESGNGNK STQKSGTTRR SRAAEVHNLS ERRRRDRINE KMRALQELLP HSNKTDKASM 360 LDEAIEYLKS LQMQLQMMWM GSGMASMMFP GMQHYMSRMG MGMVPPALPN MHLPRPPLVD 420 HAAATMASTQ NQAALCQNSM LNPINYQNQL QNPNFAEQFA SYMGFHPMQN ASQAVNMFNM 480 GSHASQPNSM FNPPTNGSGP SS

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence

MNPCLPEWNI EAEVPLANQK KPVGLDHDLV ELLWRNGQVV LHSQTHRKSG FEGNESRQLQ  60
KHDQSSLRDV SLFGNPPSFI QDDETTSWLN CPVDDSFEKE FCAPFLSEIP SVHHPVGTDK  120
GGIRQVEDSK IIKLGSSDSG VNLNPMPPPG TQTLSSLHQR RDCNLPEGGV SFGASLKANL  180
RSSNGQFGAK GHGDIRECSG MTVGSSHCGS NQVAIDAAFS RNSCSGNGDR GLSAAVNKGY  240
VEKVSPQTET AEEETAGTSS SGRSGSSFAR TCNQSAGTIS HGQKRKLRDG EESESQREEA  300
AEFESGNGNK STQKSGTTRR SRAAEVHNLS ERRRRDRINE KMRALQELLP HSNKTDKASM  360
LDEAIEYLKS LQMQLQMMWM GSGMASMMFP GMQHYMSRMG MGMVPPALPN MHLPRPPLVD  420
HAAATMASTQ NQAALCQNSM LNPINYQNQL QNPNFAEQFA SYMGFHPMQN ASQAVNMFNM  480
GSHASQPNSM FNPPTNGSGP SS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	331	336	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43010.2	1e-51	bHLH family protein