PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019193578.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 503aa MW: 54978 Da PI: 9.4289

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019193578.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.6	4.5e-05	93	113	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H r H XP_019193578.1 93 CEICGKGFQRDQNLQLHRRGH 113 *******************88 PP
2	zf-C2H2	13.4	0.00023	167	189	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ XP_019193578.1 167 WKCEKCSKRYAVQSDWKAHSKTC 189 58*****************9998 PP
3	zf-C2H2	11.8	0.00075	197	215	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsrk+++ +H + XP_019193578.1 197 DCGTVFSRKDSFITHRAFC 215 8**************8765 PP

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence
MTEKEALLSS NALTQTPTPA GSISNPPCPP PKKKRNLPGT PGKNKSKILI YFHFSLCFTY 60 DLKSFVCTVR ADPEAEVIAL SPKTLMATNR FLCEICGKGF QRDQNLQLHR RGHNLPWKLK 120 QRSSKEVRKR VYVCPEKSCV HHHPSRALGD LTGIKKHYCR KHGEKKWKCE KCSKRYAVQS 180 DWKAHSKTCG TREYRCDCGT VFSRKDSFIT HRAFCDALAE ETARVTAASN MQNAAAVAAL 240 GSNINYHFIG APPPIGPGAG MAAPHFGSIF KSTIGAGNDE NMNPVRQGQL PVWMAPGQTI 300 TSQLQGHQEF QSFGSENHPM VTTTTSCSNP LSSSSSFQLN WNNLVGNKIS TTSNSNSTNN 360 NNGEDKMDGN QAQVVSVQSL FSTQHHPHHH QMPSANMSAT ALLQKAAQVG ATTSDPGFLG 420 SLGLKCNNNN NGNENKFSGL LYAETSISMV SSHLGSEMES LDQMYPSKRR HITQNEGGGG 480 QTRDFLGVGV QSICHPSSIN GWI

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence

MTEKEALLSS NALTQTPTPA GSISNPPCPP PKKKRNLPGT PGKNKSKILI YFHFSLCFTY  60
DLKSFVCTVR ADPEAEVIAL SPKTLMATNR FLCEICGKGF QRDQNLQLHR RGHNLPWKLK  120
QRSSKEVRKR VYVCPEKSCV HHHPSRALGD LTGIKKHYCR KHGEKKWKCE KCSKRYAVQS  180
DWKAHSKTCG TREYRCDCGT VFSRKDSFIT HRAFCDALAE ETARVTAASN MQNAAAVAAL  240
GSNINYHFIG APPPIGPGAG MAAPHFGSIF KSTIGAGNDE NMNPVRQGQL PVWMAPGQTI  300
TSQLQGHQEF QSFGSENHPM VTTTTSCSNP LSSSSSFQLN WNNLVGNKIS TTSNSNSTNN  360
NNGEDKMDGN QAQVVSVQSL FSTQHHPHHH QMPSANMSAT ALLQKAAQVG ATTSDPGFLG  420
SLGLKCNNNN NGNENKFSGL LYAETSISMV SSHLGSEMES LDQMYPSKRR HITQNEGGGG  480
QTRDFLGVGV QSICHPSSIN GWI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-113	C2H2 family protein