PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019193557.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 154aa MW: 17193.6 Da PI: 6.54 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 54.3 | 1.8e-17 | 13 | 61 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ie +s r vtfskRr g+ KKA EL ++a+va+++fs+++++y+y XP_019193557.1 13 KKIEKESSRMVTFSKRRSGLVKKAVELEDKTGARVALVVFSPRDHVYTY 61 68**********************************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence |
MMRGTGKKKI EIKKIEKESS RMVTFSKRRS GLVKKAVELE DKTGARVALV VFSPRDHVYT 60 YGDIPAMSDL VERITNNTNA AMSDLVERIT NNTSIVPYEA GQMQDNGTVD SSTLGSGSNY 120 KNLIHWVDSI DIEGCNNLEE TLKLKQILEV LLQD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36590.1 | 3e-13 | M-type_MADS family protein |