PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019193206.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Protein Properties

Length: 590aa MW: 66507.7 Da PI: 4.6137

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019193206.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	66.7	3.5e-21	132	233	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 f kvlt+sd+ ++ l++p++ a ++ ++++s++l+ +d +g W +++ +r+++ r +ltkGWk Fvk+++L +gD++vF + ++ XP_019193206.1 132 FSKVLTTSDTRSNWGLCIPRRDAINCfpaldTTQEKSSQMLIARDIHGSDWCFQHVFRGHPPRhLLLTKGWKAFVKSKELVAGDSFVFI--RGEN 224 88*******************99999666678999**************9999887999******************..4499 PP E..EEEEE- CS B3 90 felvvkvfr 98 ++++v+v+r XP_019193206.1 225 GQMHVGVRR 233 999**98 PP

Sequence ? help Back to Top
Protein Sequence Length: 590 aa Download sequence
MMDGQVGSSQ HQQLVELHCF DEAADYLYEE LWKACADPLM CVPTCGQRVF YFPGVHMDQL 60 DNSTNPEVID QQQISNLPPK VLCRVVNVQL LAKQETDEAY AQITLIPQPF ETGVNTVDPC 120 LHESPRSQFH SFSKVLTTSD TRSNWGLCIP RRDAINCFPA LDTTQEKSSQ MLIARDIHGS 180 DWCFQHVFRG HPPRHLLLTK GWKAFVKSKE LVAGDSFVFI RGENGQMHVG VRRLVYQQSC 240 VGLSRTSRQT KQVLGAVISQ AIATQTLFVV NYEARTSQCI ISLNKHLQSV ASGINLSVYY 300 EGEGYQHRRS EGNDEQMEEV DGTIYPLPQP TTISSEVDWE GLYDILESPD PLELDHEGGT 360 GENDERFNNL GNQDFEEWEE EQGQDPSPIL QHHGEESGMG DIPMAIQEGS LQAMDISSIP 420 SQIPYGGPGR GDEKIPWGGY LVAQRCIPTL NRVISRYPDS LLGFKPWSNA VKPTFLEVLA 480 ELVYLLERFT VESLGRSRDE FNTAKQFLWD LKNSGINVNW VETRLVQIDE ALEKQSLMQQ 540 QKELMLKYEE ARSALGKVEE DLGSVNMQLE ELSSHNHHPA TNKPILEGLL

Sequence ? help Back to Top

Protein Sequence Length: 590 aa Download sequence

MMDGQVGSSQ HQQLVELHCF DEAADYLYEE LWKACADPLM CVPTCGQRVF YFPGVHMDQL  60
DNSTNPEVID QQQISNLPPK VLCRVVNVQL LAKQETDEAY AQITLIPQPF ETGVNTVDPC  120
LHESPRSQFH SFSKVLTTSD TRSNWGLCIP RRDAINCFPA LDTTQEKSSQ MLIARDIHGS  180
DWCFQHVFRG HPPRHLLLTK GWKAFVKSKE LVAGDSFVFI RGENGQMHVG VRRLVYQQSC  240
VGLSRTSRQT KQVLGAVISQ AIATQTLFVV NYEARTSQCI ISLNKHLQSV ASGINLSVYY  300
EGEGYQHRRS EGNDEQMEEV DGTIYPLPQP TTISSEVDWE GLYDILESPD PLELDHEGGT  360
GENDERFNNL GNQDFEEWEE EQGQDPSPIL QHHGEESGMG DIPMAIQEGS LQAMDISSIP  420
SQIPYGGPGR GDEKIPWGGY LVAQRCIPTL NRVISRYPDS LLGFKPWSNA VKPTFLEVLA  480
ELVYLLERFT VESLGRSRDE FNTAKQFLWD LKNSGINVNW VETRLVQIDE ALEKQSLMQQ  540
QKELMLKYEE ARSALGKVEE DLGSVNMQLE ELSSHNHHPA TNKPILEGLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46530.1	2e-90	ARF family protein