PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019193152.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 606aa MW: 69452.5 Da PI: 5.9541

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019193152.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.5	8e-27	81	178	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerr....traetrtgCkaklkvkkekdgkwevtklel 83 fY+eYA+++GF++ +++s++sk ++e+++++f Cs++g+++ ++k+ + +r+ ++t+Cka+++vk+++dg+w ++++e+ XP_019193152.1 81 FYQEYARSMGFQTAIQNSRRSKSSREFIDAKFACSRYGTKRGNDKSanrprssqdP----EngggRRVCEKTDCKASMHVKRRSDGRWIIHRFEK 171 9**************************************999996666654443....145559************************* PP FAR1 84 eHnHela 90 eHnHel+ XP_019193152.1 172 EHNHELS 178 ***96 PP

Sequence ? help Back to Top
Protein Sequence Length: 606 aa Download sequence
MDKEDKKTNG VVNLVNNEER PDHGADELGG DLVDFEENIN GEDGGDLYSP DQSDLGEFKD 60 DVNLEPLDGM EFESHGEALL FYQEYARSMG FQTAIQNSRR SKSSREFIDA KFACSRYGTK 120 RGNDKSANRP RSSQDPENGG GRRVCEKTDC KASMHVKRRS DGRWIIHRFE KEHNHELSLP 180 QAVTEQTKRM YAAMARQLAE FKNVVGTKSD SKSSFERAQN LAMDAGEANI LLEFFIQMQS 240 MNSNFFYAVD VSEDHRLKNF LWVDAKSRHD YARFSDVVSF DATYVRNKYK IPLALFIGVN 300 RNYQFVLLGT ALLSDESSAT LSWVMRTWLR AMGGRAPKAI VTDHEHVMTS VISEIFPSSL 360 HFFCLGKVSE SLKNVVMKQN EEEFMVKFEE CIFGPWTDEE FEERWQNLVN TFELRENELL 420 WSLYEERRKW VPTLMRSNNA AFLGESVNSF FDKYVNKETT LQEFVKQYGV ILQDRYKEEA 480 KADSDTTRYP PLAASGEKKC RVQRYNDLCQ RAMRLSEEGS LSQERYTSAL HALHEAYGNC 540 VNLESSNKIN PVGTLTSSTP GDLFVEGDNQ TSKTNKKRSS PTKKRKEEPK VMRSSSQLND 600 EAPRHA

Sequence ? help Back to Top

Protein Sequence Length: 606 aa Download sequence

MDKEDKKTNG VVNLVNNEER PDHGADELGG DLVDFEENIN GEDGGDLYSP DQSDLGEFKD  60
DVNLEPLDGM EFESHGEALL FYQEYARSMG FQTAIQNSRR SKSSREFIDA KFACSRYGTK  120
RGNDKSANRP RSSQDPENGG GRRVCEKTDC KASMHVKRRS DGRWIIHRFE KEHNHELSLP  180
QAVTEQTKRM YAAMARQLAE FKNVVGTKSD SKSSFERAQN LAMDAGEANI LLEFFIQMQS  240
MNSNFFYAVD VSEDHRLKNF LWVDAKSRHD YARFSDVVSF DATYVRNKYK IPLALFIGVN  300
RNYQFVLLGT ALLSDESSAT LSWVMRTWLR AMGGRAPKAI VTDHEHVMTS VISEIFPSSL  360
HFFCLGKVSE SLKNVVMKQN EEEFMVKFEE CIFGPWTDEE FEERWQNLVN TFELRENELL  420
WSLYEERRKW VPTLMRSNNA AFLGESVNSF FDKYVNKETT LQEFVKQYGV ILQDRYKEEA  480
KADSDTTRYP PLAASGEKKC RVQRYNDLCQ RAMRLSEEGS LSQERYTSAL HALHEAYGNC  540
VNLESSNKIN PVGTLTSSTP GDLFVEGDNQ TSKTNKKRSS PTKKRKEEPK VMRSSSQLND  600
EAPRHA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	0.0	FAR1 family protein