PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019193052.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 762aa    MW: 83831.5 Da    PI: 5.4081
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019193052.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.71.1e-1993147256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     ++ +++t++q++eLe++F+++++p+ ++r+eL ++lgL+  q+k+WFqN+R++ k
  XP_019193052.1  93 KPYHRHTQHQIQELEAFFKECPHPTDKQRKELGRRLGLEPLQIKFWFQNKRTQVK 147
                     77899**********************************************9877 PP
2START164.29.4e-522885081206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela +a++el+ +a  +ep+Wv s     + +++de+ + f+++ +     +++ea+r++ +v+ ++  lve+l++++  W  ++     +a t+
  XP_019193052.1 288 ELAAAAMEELLEMARMKEPLWVPSIdgttTLLDQDEYFRLFSRGFSpkpqgYKTEASRETEIVIINHLHLVETLMNVS-HWAAMFSsivsRAVTV 381
                     57899********************9999999*********8865599999***************************.*******9999***** PP

                     EEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
           START  83 evissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwveh 169
                     +v+s+g       gal l++ae+q+++p+vp R  +f+Ry++ l +g+w++vdvS+d+ + +        ++++pSg++i++++ng++kvtwveh
  XP_019193052.1 382 DVVSTGhqagsydGALLLIYAEFQVPTPHVPtRYCYFIRYCKNLLEGTWAVVDVSLDHVNLVG------WCRKRPSGCIIKEVPNGYTKVTWVEH 470
                     **********************************************************99976......599*********************** PP

                     EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 170 vdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                     v+ +++ + ++++++l+ s++++gak+wvatl+rqce+
  XP_019193052.1 471 VEIEDNEVhSNIYKPLIDSCIVFGAKRWVATLDRQCER 508
                     ******99789*************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 762 aa     Download sequence    
MSDEMMMIPV SRLSSMVTNY NGYDAGFASS SGFSVGQPNH EEGPHPLPEI LSNTSEGRLM  60
QLPTAANFGN NDDDEDNSVN DEGANQQSTK RPKPYHRHTQ HQIQELEAFF KECPHPTDKQ  120
RKELGRRLGL EPLQIKFWFQ NKRTQVKTHN EREENENLRA EAQMLRAENA RLRQELGDFT  180
CRHCNGPLTI GEVPFDVNEA RMEYARLKAE LDRVSSITAK YLGEPPFATF NVCSPPATPG  240
AGSQHFGAPT SAGQSAADNV GEAYGSGGET PRSMNCPGGE AHKSVVTELA AAAMEELLEM  300
ARMKEPLWVP SIDGTTTLLD QDEYFRLFSR GFSPKPQGYK TEASRETEIV IINHLHLVET  360
LMNVSHWAAM FSSIVSRAVT VDVVSTGHQA GSYDGALLLI YAEFQVPTPH VPTRYCYFIR  420
YCKNLLEGTW AVVDVSLDHV NLVGWCRKRP SGCIIKEVPN GYTKVTWVEH VEIEDNEVHS  480
NIYKPLIDSC IVFGAKRWVA TLDRQCERMA CTMATNIPTS DNLAIASPQS RKSILKLAER  540
MVISFCSGVS SSTVAHEWTV LSGTGSDDVR IMIRKSVDDP GRPSGLVLSA STSFWLPTQP  600
KRVFDFLRSE HSRSEWDILS NSGTVTEMAH IANGRETGNC VSLLRVNSAD WNQSNMLILQ  660
ESSTDPTASF VIYAPVDIVA MNGIMGGGDP DYVGLLPSGF AILPDGALAG SLLTISFQIL  720
VDSVPTARLS VGSVATVNEL IHCTAERIKA SLSDVLGTYG FQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0HD-ZIP family protein