PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019193044.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

AP2

Protein Properties

Length: 452aa MW: 49700.7 Da PI: 6.1992

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019193044.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	52.7	1.1e-16	188	247	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + g ++ ++++lg ++t+e+Aaka++ a++k++g XP_019193044.1 188 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDTEEKAAKAYDLAALKYWG 247 78*****************655454478446***********************98 PP
2	AP2	48.5	2.1e-15	290	341	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_019193044.1 290 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 341 78**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence
MNSWLGFSVV QDDDGNQDFP GNEEKEEEET TATNNVGQQG DVEGEDWRRY EKNMVETPKL 60 EDFLGSCYTP PPEIPTGEHL SSFPPTAAPP LPFHYPHPSN NPAAMYPFLF DNAPSPSPSP 120 AATSSTSISG LKSWLRQTPP PPPPPFQPLS LAVTPSTYSH PEPAVSDAKK TPPAAPRKSI 180 DTFGQRTSQY RGVTRHRWTG RYEAHLWDNS CRKEGQTRKG RQVYLGGYDT EEKAAKAYDL 240 AALKYWGPTT HINFPISMYE KELEEMKNMS RQEYVAHLRR KSSGFSRGAS VYRGVTRHHQ 300 HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR GTSAVTNFDI TRYDVKRICS 360 STTLIGGDLA KRSSGHGNPA NPLDEFSSGA SPSAASSQPI LAGESSASGG DMDCSRGYYA 420 LQGPSQYEDG NNEGDNNPSI VHPAPMFALL NE

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence

MNSWLGFSVV QDDDGNQDFP GNEEKEEEET TATNNVGQQG DVEGEDWRRY EKNMVETPKL  60
EDFLGSCYTP PPEIPTGEHL SSFPPTAAPP LPFHYPHPSN NPAAMYPFLF DNAPSPSPSP  120
AATSSTSISG LKSWLRQTPP PPPPPFQPLS LAVTPSTYSH PEPAVSDAKK TPPAAPRKSI  180
DTFGQRTSQY RGVTRHRWTG RYEAHLWDNS CRKEGQTRKG RQVYLGGYDT EEKAAKAYDL  240
AALKYWGPTT HINFPISMYE KELEEMKNMS RQEYVAHLRR KSSGFSRGAS VYRGVTRHHQ  300
HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR GTSAVTNFDI TRYDVKRICS  360
STTLIGGDLA KRSSGHGNPA NPLDEFSSGA SPSAASSQPI LAGESSASGG DMDCSRGYYA  420
LQGPSQYEDG NNEGDNNPSI VHPAPMFALL NE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72570.1	1e-112	AP2 family protein