PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019193040.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 351aa    MW: 39904.7 Da    PI: 7.3931
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019193040.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.41.1e-07129149526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C  f++ G C +Gd+C FaHg
  XP_019193040.1 129 VCAEFRK-GSCVRGDNCEFAHG 149
                     7999***.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    
MGSDNCGEHL HKFHPSHQLF FNRKYLRDPE IPPRKLLSRR PSGEPEMPHM ESPTKMQQED  60
TQFQKFLPYN NSDDDDDDPY SSDNFRMFEF KVRRCTRSRS HDWTDCPFAH PGEKARRRDP  120
RKYHYSGTVC AEFRKGSCVR GDNCEFAHGV FECWLHPTRY RTEACKDGKN CKRKVCFFAH  180
TPRQLRVLPP DCHDNNNSPI NMNHCCACCH SPNSTLMAIS HMSPPASPSL PSPATKVPFS  240
RFGGPEMDNQ FEHNPNSMTE LVSSLESMNL NGTNTAAYSH HHPTVNLINM KIPAMVDLNF  300
NNPSDDQPQF ILSPSTPSPS KILTAAGATT KYYNDSGLPG IDLGWVNDLL T
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.11e-70C3H family protein