PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019192923.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 487aa MW: 52008.8 Da PI: 6.7086

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019192923.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.5	3.6e-06	372	410	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L++A+eYIk L XP_019192923.1 372 VRKEKMGDRITALQQLVSPF-----GKTDTASVLTEAIEYIKFL 410 5778999********998.....8**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence
MAEEFQLGAG NWWVSASSSS SRNRFDSGGG SSSSSSSPAA AAASSALHMS SNSVSMGISS 60 FGWAAPGEVV DIKAARSSLD SASATASGGV LVDPNLQIMG LGLSSQPIDW NQSLFRGEKG 120 EQNSFGSMLQ QQELSSNANY HHHHHQQETA SEEQWRHRVL YSGGGGSDEA SVNDYNNKQQ 180 MGGGGRAGFS LDQPAHEYLG GGASTCQGLN TSFELDSSYG SPSTILQAGL LVSNSNNNQP 240 NFTARTSMSF PYNNTPANYG AAGDVMSSSW SNKFPQFLRT TSPPPPQQPQ LHFSNNTTFW 300 NATAAAMNDV RSTFFPSLHS QLPSSAVDEK PKNVSDLSTS TAAAAKKTSN ETPSGKRSRN 360 ENPSPPMPPF KVRKEKMGDR ITALQQLVSP FGKTDTASVL TEAIEYIKFL HDQVNALSAP 420 YMKSGSSMQH QQQQQISSEK SKDPEGGARQ DLRSRGLCLV PVSSTFPVTH ETTADFWSPT 480 SFGGSFR

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence

MAEEFQLGAG NWWVSASSSS SRNRFDSGGG SSSSSSSPAA AAASSALHMS SNSVSMGISS  60
FGWAAPGEVV DIKAARSSLD SASATASGGV LVDPNLQIMG LGLSSQPIDW NQSLFRGEKG  120
EQNSFGSMLQ QQELSSNANY HHHHHQQETA SEEQWRHRVL YSGGGGSDEA SVNDYNNKQQ  180
MGGGGRAGFS LDQPAHEYLG GGASTCQGLN TSFELDSSYG SPSTILQAGL LVSNSNNNQP  240
NFTARTSMSF PYNNTPANYG AAGDVMSSSW SNKFPQFLRT TSPPPPQQPQ LHFSNNTTFW  300
NATAAAMNDV RSTFFPSLHS QLPSSAVDEK PKNVSDLSTS TAAAAKKTSN ETPSGKRSRN  360
ENPSPPMPPF KVRKEKMGDR ITALQQLVSP FGKTDTASVL TEAIEYIKFL HDQVNALSAP  420
YMKSGSSMQH QQQQQISSEK SKDPEGGARQ DLRSRGLCLV PVSSTFPVTH ETTADFWSPT  480
SFGGSFR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	1e-63	bHLH family protein