PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019192853.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 458aa MW: 51599.1 Da PI: 6.5581

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019192853.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.2	6.1e-13	281	327	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h e+Er+RR+++N++f Lr+++P+ K++Ka+ L Av YI+ L XP_019192853.1 281 MNHVEAERQRREKLNHRFYALRSVVPNV-----SKMDKASLLADAVTYINRL 327 589**********************6.....5*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence
MEEIISSSSI PNSLQKRIQF FLHNRPEWWV YAIFWQASKG GHGRVVLSWG DGHFRGTKGV 60 GPSRSNHLQL QNKFEGEGLV EGNVTEYAEW YYMVSMTKSF AAPDDLIVQT FDSGSYIWLS 120 DSNQVQFYHS DRAKEAHLHG INTLVCFSTS AGVVELGSSD SIHEHWELLQ IGRSIFNAQT 180 QNQTQSQDLF PFSQDLNQCL SPIDFRLGDP QEKEKESRAV DLHGPDSDIK KEVLVINDLS 240 PDSGNSDFFE TTLTHQSGMN NMVGSRKRSR KGALTGREMA MNHVEAERQR REKLNHRFYA 300 LRSVVPNVSK MDKASLLADA VTYINRLKAK VEDLENKLGT HGENQMSRKR IMEIMHDAQS 360 TTTSTVDHVM GGGSPFGAMD VEVKIIGSEA MIRVHSPDVN YPAARLMNVL REMELKIHHA 420 SVSSVRDLML QDVVIRVPDG LTNEEDALKA VILRRLQS

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence

MEEIISSSSI PNSLQKRIQF FLHNRPEWWV YAIFWQASKG GHGRVVLSWG DGHFRGTKGV  60
GPSRSNHLQL QNKFEGEGLV EGNVTEYAEW YYMVSMTKSF AAPDDLIVQT FDSGSYIWLS  120
DSNQVQFYHS DRAKEAHLHG INTLVCFSTS AGVVELGSSD SIHEHWELLQ IGRSIFNAQT  180
QNQTQSQDLF PFSQDLNQCL SPIDFRLGDP QEKEKESRAV DLHGPDSDIK KEVLVINDLS  240
PDSGNSDFFE TTLTHQSGMN NMVGSRKRSR KGALTGREMA MNHVEAERQR REKLNHRFYA  300
LRSVVPNVSK MDKASLLADA VTYINRLKAK VEDLENKLGT HGENQMSRKR IMEIMHDAQS  360
TTTSTVDHVM GGGSPFGAMD VEVKIIGSEA MIRVHSPDVN YPAARLMNVL REMELKIHHA  420
SVSSVRDLML QDVVIRVPDG LTNEEDALKA VILRRLQS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17880.1	2e-73	bHLH family protein