PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019192724.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 683aa MW: 78473.5 Da PI: 8.1787

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019192724.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.7	1.1e-19	77	164	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 Yn+YA ++GFs rk k+++ +r++ +++ f+Csk+g+r ++ ++ ++ +tr gC+ + + +++g+w+vtk ++eHnH+l+p XP_019192724.1 77 IYNDYAFRMGFSARKGKQYYVTRTRILKTKMFCCSKSGFRIIPDTP--NKCYSKIVTRSGCNVMCQFDIDSNGNWVVTKHVKEHNHDLCP 164 5**************************************99988..88999*********************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 683 aa Download sequence
MAFWSFCVLL KLKAHVIQLD VDITVVSFME QYSFNDFDHS IGVNGTSEHV IVEESAIPDN 60 EELLGLSVGS IEDAFVIYND YAFRMGFSAR KGKQYYVTRT RILKTKMFCC SKSGFRIIPD 120 TPNKCYSKIV TRSGCNVMCQ FDIDSNGNWV VTKHVKEHNH DLCPASSSYM LRSHRKVSEN 180 QLTYSVKHLD RTDSNSLIEI FRRRQMDEAD FYFEFELYED ARLCNFFWRD GQMKADYDLF 240 GDLVVHDTTY RTNRYDMICA PFIRLSGVRS MGGKHPQTIM TDQCAAMAAA IAQVFSNSNH 300 RLCIWHIGEN SKKHIKGLRN KKGFLELFNF LLKYTDTEAE FEFYWTRMMT EYGCHKNVWL 360 NKLYSNREKW CPAFSKEYFS GGILSSQRSE SMNHSISRRL SKTAGLCDFY NSFVSVVSEW 420 RSRENGENVC CSQGLAPMAM NYVKLLSHAR DIYTIEIYYL FEEQFVKGTS CHQESVGGSG 480 NEIKYHVWRP DVDLIRHKVC FKVNDLDISC SYKLFSEMGI LCSHSLRIFN VHCVAAIPDK 540 YIIKRWTKKV IEDRIISSDC SSNIFSIASY VWVIQMGRKF QQLVLSSQAN CKTREVCENA 600 FEDARRKVGG EIGPLVIEDG EQRTTGVIQN PARNRAKGER NRRHISTIEK KASVEGVVAN 660 IVGSGYFVHP SSGSYELGLV KSS

Sequence ? help Back to Top

Protein Sequence Length: 683 aa Download sequence

MAFWSFCVLL KLKAHVIQLD VDITVVSFME QYSFNDFDHS IGVNGTSEHV IVEESAIPDN  60
EELLGLSVGS IEDAFVIYND YAFRMGFSAR KGKQYYVTRT RILKTKMFCC SKSGFRIIPD  120
TPNKCYSKIV TRSGCNVMCQ FDIDSNGNWV VTKHVKEHNH DLCPASSSYM LRSHRKVSEN  180
QLTYSVKHLD RTDSNSLIEI FRRRQMDEAD FYFEFELYED ARLCNFFWRD GQMKADYDLF  240
GDLVVHDTTY RTNRYDMICA PFIRLSGVRS MGGKHPQTIM TDQCAAMAAA IAQVFSNSNH  300
RLCIWHIGEN SKKHIKGLRN KKGFLELFNF LLKYTDTEAE FEFYWTRMMT EYGCHKNVWL  360
NKLYSNREKW CPAFSKEYFS GGILSSQRSE SMNHSISRRL SKTAGLCDFY NSFVSVVSEW  420
RSRENGENVC CSQGLAPMAM NYVKLLSHAR DIYTIEIYYL FEEQFVKGTS CHQESVGGSG  480
NEIKYHVWRP DVDLIRHKVC FKVNDLDISC SYKLFSEMGI LCSHSLRIFN VHCVAAIPDK  540
YIIKRWTKKV IEDRIISSDC SSNIFSIASY VWVIQMGRKF QQLVLSSQAN CKTREVCENA  600
FEDARRKVGG EIGPLVIEDG EQRTTGVIQN PARNRAKGER NRRHISTIEK KASVEGVVAN  660
IVGSGYFVHP SSGSYELGLV KSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	633	643	RNRAKGERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-54	FAR1 family protein