PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019192592.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 268aa MW: 27390.2 Da PI: 7.828

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019192592.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.7	1.1e-39	34	134	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ r+rdPvyG+v++i++lqqq+ +l+ael XP_019192592.1 34 PCGACKFLRRKCVAGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVITICYEAQSRLRDPVYGCVAHIFALQQQVVNLQAEL 128 7*********************9989***************************************************************** PP DUF260 95 allkee 100 a+l+++ XP_019192592.1 129 AYLQAH 134 *99986 PP

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence
MSSNPSTSSA ASGGGPGPGG GGGGGGSGVG GGGPCGACKF LRRKCVAGCI FAPYFDSEQG 60 AAHFAAVHKV FGASNVSKLL LHIPVHKRLD AVITICYEAQ SRLRDPVYGC VAHIFALQQQ 120 VVNLQAELAY LQAHLATLEV PNAPPPVAQQ SQPQPPLFVP PAVLNIADLP TGVPMMPATY 180 DLSSLFDPMV QPAWAIQPRQ LDPRQLFGGG AATRVATVDM TSSSSSAAGS GGGGGDLQEL 240 ARELMHRHGS PTVPCTNAPS SALPPHSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45420.1	8e-81	LBD family protein