PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019192536.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 308aa MW: 33666.6 Da PI: 7.8869

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019192536.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.1	0.00029	4	26	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++sF + L Hir+H XP_019192536.1 4 YRCKFCSRSFGNGRALGGHIRSH 26 9********************99 PP
2	zf-C2H2	11.2	0.0011	175	197	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F++ L H +H XP_019192536.1 175 YRCEACSKVFRSYQALGGHRASH 197 9***********99999998887 PP
3	zf-C2H2	12.4	0.00046	228	250	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C ++Fs+ L H r+H XP_019192536.1 228 HECPICFRVFSSGQALGGHKRSH 250 79******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence
MEKYRCKFCS RSFGNGRALG GHIRSHMVNL YAESKHPERR IHGETEPIPS SETDDDGEKD 60 SSFSAAAAAG GGGGGSVVLQ DTESETESSP SGRVFRRSKR VKKSRISETR TGKMGGTDYS 120 SSMVEGEPGS SISETSPEEH VAYCLMMLSK DKWIRDGEEN CEVVKKMKGK GKCWYRCEAC 180 SKVFRSYQAL GGHRASHKKI RAQKTLLEED DNGGNAGEKK KKKNEKIHEC PICFRVFSSG 240 QALGGHKRSH FADSVSAIVV SPEACSASTS TPMKQGLSRT GGPLIDLNLP APMEDYDYDD 300 DDLLSFPC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	1e-49	C2H2 family protein