PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019192456.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MIKC_MADS

Protein Properties

Length: 216aa MW: 25501.8 Da PI: 9.9392

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019192456.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88	5.1e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqv+fskRr g+ KKA+ELSvLCd+eva+iifs++gklye+ss XP_019192456.1 9 KRIENATSRQVSFSKRRVGLRKKAYELSVLCDVEVALIIFSQKGKLYEFSS 59 79***********************************************96 PP
2	K-box	51.8	3.5e-18	79	151	5	77
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqi 77 ++++ + + e+l++e ++k+ie L+ +qR+llG++Les+s++eL+++ qLekslk+iR++K+ +ll++ XP_019192456.1 79 NNNNDSGQYREHLKHETILMEKKIELLEVSQRKLLGQGLESCSMRELNEIDCQLEKSLKHIRTRKHIHLLQEN 151 34447888899*******************************************************9999875 PP

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence
MVRGKVEMKR IENATSRQVS FSKRRVGLRK KAYELSVLCD VEVALIIFSQ KGKLYEFSSS 60 NIRQIIQRYH ERSKEARSNN NNDSGQYREH LKHETILMEK KIELLEVSQR KLLGQGLESC 120 SMRELNEIDC QLEKSLKHIR TRKHIHLLQE NAILLDKVTF FSLTLQIEIL NSQRLIIITK 180 KSDPKMDDFF FFWSQLESLV LWIPSCVELK IFLIKC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62165.4	2e-57	MIKC_MADS family protein