PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019192451.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 230aa MW: 27118.7 Da PI: 9.9635 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.9 | 5.6e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqv+fskRr g+ KKA+ELSvLCd+eva+iifs++gklye+ss XP_019192451.1 9 KRIENATSRQVSFSKRRVGLRKKAYELSVLCDVEVALIIFSQKGKLYEFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 67.9 | 3.4e-23 | 79 | 172 | 5 | 98 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++++ + + e+l++e ++k+ie L+ +qR+llG++Les+s++eL+++ qLekslk+iR++K ++++eqie l+ k l +en L k+ XP_019192451.1 79 NNNNDSGQYREHLKHETILMEKKIELLEVSQRKLLGQGLESCSMRELNEIDCQLEKSLKHIRTRKAQVYKEQIESLKAKHIHLLQENAILLDKV 172 34447888899*****************************************************************************999886 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence |
MVRGKVEMKR IENATSRQVS FSKRRVGLRK KAYELSVLCD VEVALIIFSQ KGKLYEFSSS 60 NIRQIIQRYH ERSKEARSNN NNDSGQYREH LKHETILMEK KIELLEVSQR KLLGQGLESC 120 SMRELNEIDC QLEKSLKHIR TRKAQVYKEQ IESLKAKHIH LLQENAILLD KVTFFSLTLQ 180 IEILNSQRLI IITKKSDPKM DDFFFFWSQL ESLVLWIPSC VELKIFLIKC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62165.3 | 9e-65 | MIKC_MADS family protein |