PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019192306.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Protein Properties

Length: 350aa MW: 39764 Da PI: 7.1797

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019192306.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	43.2	6.9e-14	18	97	13	99
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + rl lp ++ e++++ +l +++ sWev+ +++g+ +tkGW eFv ++g+++ D ++F+++g+ +f +vkvf + XP_019192306.1 18 QTRLELPPIISKKLV---EQEVEQVLLTSQEGSWEVET--HRSGGKLCFTKGWDEFVLQHGICVEDLLLFEHTGDLSF--KVKVFGN 97 455666666655543...34567788999999****..*****************************9887777..8999865 PP
2	B3	34	5.1e-11	261	333	15	88
-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 15 rlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrs 88 + +p +f+ ++g+ ++ + l+ s ++ ++k+ ++++++ +++++GW+eF n+Lk+g++++Fkl +++ XP_019192306.1 261 YMHIPANFCLANGLY--CNARICLKGpCSEQEVSLKV--CRGGRTiyTIISRGWSEFIAGNDLKVGEICTFKLRSTE 333 589*******998..7889*44558888888..77777777999********************87643 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MGEKFPLFFR FMAIHGSQTR LELPPIISKK LVEQEVEQVL LTSQEGSWEV ETHRSGGKLC 60 FTKGWDEFVL QHGICVEDLL LFEHTGDLSF KVKVFGNTSC ERDFKRGRTQ GNEDSVKLKV 120 DIDEVPSPVE IQKHDHAHAH DKEVNKRGRA QGKNAEDSVK LEVDIDEVPH DHAHDKVTKR 180 GRTQGKNAED SEDSVEFEVD LDEVEVDMDE VPSPVKIQKH DHAKKVTRRK RNPKVVNMSS 240 TDRSQFVRSI KQYNIRRRSP YMHIPANFCL ANGLYCNARI CLKGPCSEQE VSLKVCRGGR 300 TIYTIISRGW SEFIAGNDLK VGEICTFKLR STEGSSNGVV FDVDVLRKST

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MGEKFPLFFR FMAIHGSQTR LELPPIISKK LVEQEVEQVL LTSQEGSWEV ETHRSGGKLC  60
FTKGWDEFVL QHGICVEDLL LFEHTGDLSF KVKVFGNTSC ERDFKRGRTQ GNEDSVKLKV  120
DIDEVPSPVE IQKHDHAHAH DKEVNKRGRA QGKNAEDSVK LEVDIDEVPH DHAHDKVTKR  180
GRTQGKNAED SEDSVEFEVD LDEVEVDMDE VPSPVKIQKH DHAKKVTRRK RNPKVVNMSS  240
TDRSQFVRSI KQYNIRRRSP YMHIPANFCL ANGLYCNARI CLKGPCSEQE VSLKVCRGGR  300
TIYTIISRGW SEFIAGNDLK VGEICTFKLR STEGSSNGVV FDVDVLRKST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	8e-09	B3 family protein