PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019192293.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LBD | ||||||||
Protein Properties | Length: 210aa MW: 23857.8 Da PI: 4.0666 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 119.3 | 2.2e-37 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrr+C+++Cv+apyf +q +++fa+vhk+FGasnv+kll +lp + r++a+ s+ yeA ar++dP+yG+v+ i++l+qq+++l +e+ XP_019192293.1 7 SCGACKFLRRRCSNECVFAPYFFYDQaASHFAAVHKVFGASNVSKLLLHLPVDSRSEAAISISYEAMARMQDPIYGCVAQIFALEQQVASLMEEI 101 6*********************999978******************************************************************* PP DUF260 95 allkee 100 + ++++ XP_019192293.1 102 ENIEKQ 107 998876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence |
MTGLGSSCGA CKFLRRRCSN ECVFAPYFFY DQAASHFAAV HKVFGASNVS KLLLHLPVDS 60 RSEAAISISY EAMARMQDPI YGCVAQIFAL EQQVASLMEE IENIEKQMAY CACEGPEQQC 120 MVNDELLFFS EYNNMSINMN HNVTVPFLED SYANSTPYSQ MNMQNPPING WEDEIFFPFS 180 DSDISDIFNE TIDPNIYLQY QLMDNGNIYH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 7e-54 | LBD family protein |