PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019192025.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 353aa    MW: 37883.9 Da    PI: 9.719
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019192025.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.79.7e-1293137347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+  ++ + ++lG+g+W+ I+rt    Rt+ q+ s+ qky
   XP_019192025.1  93 SWTEDEHRSFLIGLEKLGKGDWRGISRTYVPSRTPTQVASHAQKY 137
                      7***************************999*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    
MTKETLRKCS HCGHNGHNSR TCKGCNSIKL FGVKINVVSG DESHHDPIRR CKSMGSLQQA  60
LKSANNNGDH GGGGGDAGYL SDDSNRTRKK GTSWTEDEHR SFLIGLEKLG KGDWRGISRT  120
YVPSRTPTQV ASHAQKYFIR ISSNDKKKRR TSVFDVGLND TNQNQAPPPS SPDKAPLEIP  180
KQASVSPSAP TVTKDESKGK AIETASEKLI PIAPPVDKAF PVLNLGQERP PISQNTTCEK  240
PPISPVSPLV APSFNCIPYM NMPAATRMMP VVSWAPVVTY ANQSYGYLGN SHGNYAAVPP  300
PATACVQYVS SPQHGCSPLL PREVRLGDPL GGPVAAPATR KDGLDLNMGA LKL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146150KKKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.12e-49MYB_related family protein