PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019191739.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 769aa MW: 87057.5 Da PI: 7.708

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019191739.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.5	3.4e-21	64	148	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Yn+YA+++GFsvrk +++++ +++i +++f+Csk g+++++ k ++ trtgC a ++ +dg w vtk e+ HnHel+ XP_019191739.1 64 VYNSYAYRLGFSVRKGHQRYKGSSNTIQMKKFCCSKAGYKANSGVK----AYSKIDTRTGCGAFVQFDVGDDGLWTVTKHEKVHNHELC 148 7******************99999***********99877....8999*******************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 769 aa Download sequence
MEDGTEQTNS AVDDWHSIQV SEGIVDGSVS SDKVDVDVDG SSSIPVDQDL VGLVVSNADE 60 AFEVYNSYAY RLGFSVRKGH QRYKGSSNTI QMKKFCCSKA GYKANSGVKA YSKIDTRTGC 120 GAFVQFDVGD DGLWTVTKHE KVHNHELCVF NKSHLLRSHR SVGDNQLLYL QGLNDSGVAL 180 ADGIRFLKHQ SGGSPLVGFT SRDAYNSMAA DTVKRLDGTD SNSLIEIFRR RQSTETDFFF 240 DFELDLDARL CSFFWRDGQM RRDYEVFGDL LVHDTTYRTN KYDMICAPFV GMNHHCMNVM 300 FGCGFLMNER IESFVWLFKV FSRSMGGKSP QTIMTDQCAA MAAAISKVFP TSRHRLCIWH 360 IGENSKKHIK TLRSNKDFLD MFNYVLKYTE TEAEFQFYWT RLVTDYKCHK NTWLEKLYDC 420 REKWCPAFNK DYFSGGILSS QRSETTNHSI SRRLSKTAGL CDFYSSFVSV ISEWRSKENG 480 EDFRCAQGVP AMMMEHVKLL SHAREVYTIE IYFLFEEQFM KGSACHQEMV LNDGRQQKYH 540 VWQPDIDIIR HEVSFNAANL DISCSCKLMS ELGILCCHCI RILHVHCVSS IPDKYILKRW 600 TKKVIDGRNV NIDSMVYNVG VPPSIWVFDI SRKFQRLVVS SQDSSVARKL CDEAVDDVKK 660 KFEAEVGHVH IEECGVSSSS GGVQNPSSRR LKGERNKRRS GVIEKKYSLA RGRRSAANKA 720 ALSTKGAVQS LVLENISKLA GDGYLVHPSS SSSDFVQFSK GLDDNVGVD

Sequence ? help Back to Top

Protein Sequence Length: 769 aa Download sequence

MEDGTEQTNS AVDDWHSIQV SEGIVDGSVS SDKVDVDVDG SSSIPVDQDL VGLVVSNADE  60
AFEVYNSYAY RLGFSVRKGH QRYKGSSNTI QMKKFCCSKA GYKANSGVKA YSKIDTRTGC  120
GAFVQFDVGD DGLWTVTKHE KVHNHELCVF NKSHLLRSHR SVGDNQLLYL QGLNDSGVAL  180
ADGIRFLKHQ SGGSPLVGFT SRDAYNSMAA DTVKRLDGTD SNSLIEIFRR RQSTETDFFF  240
DFELDLDARL CSFFWRDGQM RRDYEVFGDL LVHDTTYRTN KYDMICAPFV GMNHHCMNVM  300
FGCGFLMNER IESFVWLFKV FSRSMGGKSP QTIMTDQCAA MAAAISKVFP TSRHRLCIWH  360
IGENSKKHIK TLRSNKDFLD MFNYVLKYTE TEAEFQFYWT RLVTDYKCHK NTWLEKLYDC  420
REKWCPAFNK DYFSGGILSS QRSETTNHSI SRRLSKTAGL CDFYSSFVSV ISEWRSKENG  480
EDFRCAQGVP AMMMEHVKLL SHAREVYTIE IYFLFEEQFM KGSACHQEMV LNDGRQQKYH  540
VWQPDIDIIR HEVSFNAANL DISCSCKLMS ELGILCCHCI RILHVHCVSS IPDKYILKRW  600
TKKVIDGRNV NIDSMVYNVG VPPSIWVFDI SRKFQRLVVS SQDSSVARKL CDEAVDDVKK  660
KFEAEVGHVH IEECGVSSSS GGVQNPSSRR LKGERNKRRS GVIEKKYSLA RGRRSAANKA  720
ALSTKGAVQS LVLENISKLA GDGYLVHPSS SSSDFVQFSK GLDDNVGVD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-82	FAR1 family protein