PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019191664.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GRF

Protein Properties

Length: 361aa MW: 40597.3 Da PI: 8.7218

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019191664.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	79.1	4.1e-25	77	120	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e XP_019191664.1 77 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVE 120 79***************************************998 PP
2	QLQ	53.2	8.8e-19	10	44	2	36
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FT Q+q+L++Q+l+yKy+++++PvPp+Ll i+ XP_019191664.1 10 PFTVIQWQELEHQALIYKYMVSGMPVPPDLLYSIR 44 79999**************************9887 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MMSGGRSRLP FTVIQWQELE HQALIYKYMV SGMPVPPDLL YSIRRSLDSS LSSKLLLHQP 60 QHYGWNYFQM GFGKKIDPEP GRCRRTDGKK WRCSKEAYPD SKYCERHMHR GRNRSRKPVE 120 VTTPPQKAIP FSPITNTSGG GGGGGGGGLS PTTPTSLPFS YLSAATQPSS EFHHPFLYPF 180 PSSAARPDQD HTANFLLDSG AYSRNGYGHG MKEEVDEHVF FSSDTSRTMR SGSGSLDDTS 240 WQVAPLTMAS PTLAQLKQHK TYVSATPQFH EGLAAADNGK NNTDSMHHHM KLGSSEEQHH 300 QQQQPKKVMH HFFDEWPQET KHSWLDDSGD KYSTHAPLFK THLSISIPNS PHDFFMAHNE 360 K

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MMSGGRSRLP FTVIQWQELE HQALIYKYMV SGMPVPPDLL YSIRRSLDSS LSSKLLLHQP  60
QHYGWNYFQM GFGKKIDPEP GRCRRTDGKK WRCSKEAYPD SKYCERHMHR GRNRSRKPVE  120
VTTPPQKAIP FSPITNTSGG GGGGGGGGLS PTTPTSLPFS YLSAATQPSS EFHHPFLYPF  180
PSSAARPDQD HTANFLLDSG AYSRNGYGHG MKEEVDEHVF FSSDTSRTMR SGSGSLDDTS  240
WQVAPLTMAS PTLAQLKQHK TYVSATPQFH EGLAAADNGK NNTDSMHHHM KLGSSEEQHH  300
QQQQPKKVMH HFFDEWPQET KHSWLDDSGD KYSTHAPLFK THLSISIPNS PHDFFMAHNE  360
K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	8e-47	GRF family protein