PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_019191612.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 343aa MW: 38856.8 Da PI: 7.461 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.2 | 6.8e-09 | 86 | 110 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+ C f++ G C+ G+ C+FaHg XP_019191612.1 86 YKTRMCVKFME-GNCRNGEHCTFAHG 110 9**********.*************8 PP | |||||||
2 | zf-CCCH | 25.5 | 2.2e-08 | 147 | 169 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +++C+ f+ + +C+yG+rC+F H XP_019191612.1 147 MKICKKFYNGEECPYGERCNFLH 169 579******66************ PP | |||||||
3 | zf-CCCH | 40.2 | 5.8e-13 | 227 | 252 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G+rC+FaHg XP_019191612.1 227 WKTKICSKWEITGQCPFGERCHFAHG 252 8************************8 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 343 aa Download sequence |
MSFPDPPPPS QSFVSLPYSG GDMGGGFWPP LQMNQEHIEL YSQFENEPPL KRSRNSEINP 60 LVSANAQNPK VNPPNLPGKG SNHIFYKTRM CVKFMEGNCR NGEHCTFAHG AEDLREPPPN 120 WQDIVREKDK DRGAGNWNND QKVIHRMKIC KKFYNGEECP YGERCNFLHE RSPQFKNDMA 180 REQRESSAIS IGTTGSMLGR RSDSDQFEIN QHASVDSDAY RIKPTFWKTK ICSKWEITGQ 240 CPFGERCHFA HGHSELKAPA GRTEMEATTN FAPAPIKPLA PAVDPSPANA VPCAPVKEQQ 300 QQPEEGKKFL KWKPTKKICS VYADWIEDLV PPHLLCRKAE DEF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G19360.1 | 5e-73 | C3H family protein |