PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019191533.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C3H

Protein Properties

Length: 523aa MW: 58764.2 Da PI: 7.4449

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019191533.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18	5.2e-06	98	118	7	27
SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 7 rffartGtCkyGdrCkFaHgp 27 +ff+ +G+C+ Gd+C F Hgp XP_019191533.1 98 CFFYNNGFCNKGDKCVFLHGP 118 578888*************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 523 aa Download sequence
MQFTGEKMEE ELLKCNTDCV YFLASPLTCK KGVECEYRHN DIARLNPRDC WYWLSGSCLN 60 PTCGFRHPPL QSSSGMSYES TTTYHQSVVQ VNKTNVPCFF YNNGFCNKGD KCVFLHGPDD 120 GVPTWQSSKI ASGVPDGLAL EKKKCLGSEK GSAQVETHPS SFETNLKISA NGKVMTEVNL 180 QPATNNLTDG NTSPGISGSQ SEEAVAVKSI SSLPAEGFTG GGSHLATAWS SDDEMEDNIE 240 REECLESSPG FDVLVNDRSE ELGYEVDHEY SLQNDMDGRT LDEQYTGDDS EDNSEYHPVH 300 LDTGIVLDNE CTSYLLRKIN GHARQRVTDY ILPQKRKSMP TKWAFSAKGN MDLRNHLKGR 360 QTVDRYTLNH YHGRHDSSYF SAPSTNRPHW HSTRKRHQRL ASKVESKATG SQSERGSFLN 420 GINHESTLRH SRMSSRRQHF KRIHSKKLPF LSEVVSRMGV SKKRESTDNS KLFSAPKSLS 480 QIKEEKRRTK GDWNLGPQLS GTNVEDEFQG PKSLAEILQS KRR

Sequence ? help Back to Top

Protein Sequence Length: 523 aa Download sequence

MQFTGEKMEE ELLKCNTDCV YFLASPLTCK KGVECEYRHN DIARLNPRDC WYWLSGSCLN  60
PTCGFRHPPL QSSSGMSYES TTTYHQSVVQ VNKTNVPCFF YNNGFCNKGD KCVFLHGPDD  120
GVPTWQSSKI ASGVPDGLAL EKKKCLGSEK GSAQVETHPS SFETNLKISA NGKVMTEVNL  180
QPATNNLTDG NTSPGISGSQ SEEAVAVKSI SSLPAEGFTG GGSHLATAWS SDDEMEDNIE  240
REECLESSPG FDVLVNDRSE ELGYEVDHEY SLQNDMDGRT LDEQYTGDDS EDNSEYHPVH  300
LDTGIVLDNE CTSYLLRKIN GHARQRVTDY ILPQKRKSMP TKWAFSAKGN MDLRNHLKGR  360
QTVDRYTLNH YHGRHDSSYF SAPSTNRPHW HSTRKRHQRL ASKVESKATG SQSERGSFLN  420
GINHESTLRH SRMSSRRQHF KRIHSKKLPF LSEVVSRMGV SKKRESTDNS KLFSAPKSLS  480
QIKEEKRRTK GDWNLGPQLS GTNVEDEFQG PKSLAEILQS KRR