PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019191488.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 376aa MW: 42000.4 Da PI: 6.7127

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019191488.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.2e-05	204	223	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C k+F+r nL+ H+ XP_019191488.1 204 FSCHLCFKTFNRYNNLQMHM 223 89*****************9 PP
2	zf-C2H2	15.5	4.8e-05	288	310	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F k + ++H +++ XP_019191488.1 288 FMCRKCGKPFAVKGDWRTHEKNC 310 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence
MTEPYHNFFN GWLNFSPLHQ YEQEISTISS SPHLQPSNNT LYYYHHHHHN TAAPPPPPPP 60 PPREPRPILP NLNLREEEEG GGGEEEVEED EEETTNTETS PPPCNAETSK KSSSSIKEES 120 LRSFSASSTD EEDVSVALHI GLPSSSSSSS SIRHGSTSDF TTYAAAASSA SADNVLSGLP 180 LNRLNNGQYW IPTPSQILIG PTQFSCHLCF KTFNRYNNLQ MHMWGHGSQY RKGPESLRGT 240 QPTAMLRLPC FCCAPGCKHN IDHPSARPLK DFRTLQTHYK RKHGAKPFMC RKCGKPFAVK 300 GDWRTHEKNC GKIWFCVCGS DFKHKRSLKD HVKAFGHGHA HAALPDDAPP NHLAGEEDNE 360 STSDVEQDYY VYTGDF

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence

MTEPYHNFFN GWLNFSPLHQ YEQEISTISS SPHLQPSNNT LYYYHHHHHN TAAPPPPPPP  60
PPREPRPILP NLNLREEEEG GGGEEEVEED EEETTNTETS PPPCNAETSK KSSSSIKEES  120
LRSFSASSTD EEDVSVALHI GLPSSSSSSS SIRHGSTSDF TTYAAAASSA SADNVLSGLP  180
LNRLNNGQYW IPTPSQILIG PTQFSCHLCF KTFNRYNNLQ MHMWGHGSQY RKGPESLRGT  240
QPTAMLRLPC FCCAPGCKHN IDHPSARPLK DFRTLQTHYK RKHGAKPFMC RKCGKPFAVK  300
GDWRTHEKNC GKIWFCVCGS DFKHKRSLKD HVKAFGHGHA HAALPDDAPP NHLAGEEDNE  360
STSDVEQDYY VYTGDF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-106	C2H2 family protein