PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019191462.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 439aa MW: 49110.7 Da PI: 9.2571

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019191462.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.8	0.00017	380	399	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cgk+F +++ L+ H++++ XP_019191462.1 380 CSQCGKPF-NPEKLHAHMKSC 399 ******.********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence
MSVLKRSTLF LFVTTLPVSA VARPFCRRFM EPHHHHHPPS VAAAAAAAEV RKLHIVYFLS 60 RNGRIEHPHL IRVHHLSRHG VRLRDVKRWM GELRGKELPE SYAWSYKRKY KTGYVWQDLV 120 DDDLLTPISD NEYVLKGSEI SSSTPTKEHC YREKVVPMQK DSLLEEEEEE AAKGSKPSAK 180 EETDQSHHQS PSDESRKTSS EIEEEESPVF GSETSTMTDD SPAAKLEEDQ EMHDGRRSVD 240 DADQKSSSLR SLFAKKKRGG GEDGDEEKNG TPRSTTSNST FGKSRSSSGG GGGSSSIFRN 300 LISCGTVDTN DSAVLPMQRR RPAAASSAEI CKPEKLGGSQ RIYRTNWNQE QQSKPRKSCD 360 GVYNGGRRSF SGTYYKSPNC SQCGKPFNPE KLHAHMKSCK GMKMWAKTTH PVSSAPEKDS 420 ERSVEKSTKN SVSARFLTR

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence

MSVLKRSTLF LFVTTLPVSA VARPFCRRFM EPHHHHHPPS VAAAAAAAEV RKLHIVYFLS  60
RNGRIEHPHL IRVHHLSRHG VRLRDVKRWM GELRGKELPE SYAWSYKRKY KTGYVWQDLV  120
DDDLLTPISD NEYVLKGSEI SSSTPTKEHC YREKVVPMQK DSLLEEEEEE AAKGSKPSAK  180
EETDQSHHQS PSDESRKTSS EIEEEESPVF GSETSTMTDD SPAAKLEEDQ EMHDGRRSVD  240
DADQKSSSLR SLFAKKKRGG GEDGDEEKNG TPRSTTSNST FGKSRSSSGG GGGSSSIFRN  300
LISCGTVDTN DSAVLPMQRR RPAAASSAEI CKPEKLGGSQ RIYRTNWNQE QQSKPRKSCD  360
GVYNGGRRSF SGTYYKSPNC SQCGKPFNPE KLHAHMKSCK GMKMWAKTTH PVSSAPEKDS  420
ERSVEKSTKN SVSARFLTR