PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019191433.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ARF

Protein Properties

Length: 694aa MW: 76131 Da PI: 6.9159

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019191433.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.3	1.4e-23	122	223	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF + + XP_019191433.1 122 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL--RAE 212 89**************************996555555..89*******************************************..448 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+v+++r+ XP_019191433.1 213 NGDLCVGIRRA 223 8999**997 PP
2	Auxin_resp	114.6	8.8e-38	288	371	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a ++++Fev+Y+Prast+eF+vk++ v++al+++++ GmRfkmafetedss++++ +Gt+++v+ +dp+rWp+S+Wr+L+ XP_019191433.1 288 AANLAVNGQPFEVIYYPRASTPEFCVKASLVKTALQIRWCSGMRFKMAFETEDSSRISWfMGTISSVQVADPIRWPDSPWRLLQ 371 789999****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 694 aa Download sequence
MITFMDSKDT VREPEKCLDS QLWHACAGSM VQMPPVNSKV FYFPQGHAEH ASSNVDFRNS 60 SRIPSYIPCR MSGIRYMADP ETDEVFSKIR LVPVSRNEVE FEDDGGVGGV NGGDSPDKPS 120 SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYSADPPVQ TILAKDVHGE TWKFRHIYRG 180 TPRRHLLTTG WSTFVNHKKL VAGDSIVFLR AENGDLCVGI RRAKRGIGGG PETSSGWNPV 240 GGNCMVPYGG FSAFLREDEN KLMRNGNGRN NGNLMGSGKV KAESVVEAAN LAVNGQPFEV 300 IYYPRASTPE FCVKASLVKT ALQIRWCSGM RFKMAFETED SSRISWFMGT ISSVQVADPI 360 RWPDSPWRLL QVTWDEPDLL QNVKRVSPWL VELVSNMPTM HISPFSPPRK KFRLPQHPDF 420 PFDGQLPMPA FSSNHFLGPN GPFGCLPDNP PPAGMQGARH AQYGLSLSDL HFNKLQSSGF 480 FPVGFPPLDH AAMPSRPNNS PAIHKPCSTE EISCLLTMGN SAETLKKSDS GKAPLVLFGK 540 PILTEQQISL SCSGDTVSPV GTGNSSSDGN PHNKLGNTSD SSGPNLNLHG TLENSPRDGS 600 QPEPNLETGH CKVFMESEDV GRTLDLSLLE SYEKLNKKLA DMFGIENSEV LNHVLYRDVT 660 GAVKHLGDEP FSEFMKSARR LKILMDSSSN NVGV

Sequence ? help Back to Top

Protein Sequence Length: 694 aa Download sequence

MITFMDSKDT VREPEKCLDS QLWHACAGSM VQMPPVNSKV FYFPQGHAEH ASSNVDFRNS  60
SRIPSYIPCR MSGIRYMADP ETDEVFSKIR LVPVSRNEVE FEDDGGVGGV NGGDSPDKPS  120
SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYSADPPVQ TILAKDVHGE TWKFRHIYRG  180
TPRRHLLTTG WSTFVNHKKL VAGDSIVFLR AENGDLCVGI RRAKRGIGGG PETSSGWNPV  240
GGNCMVPYGG FSAFLREDEN KLMRNGNGRN NGNLMGSGKV KAESVVEAAN LAVNGQPFEV  300
IYYPRASTPE FCVKASLVKT ALQIRWCSGM RFKMAFETED SSRISWFMGT ISSVQVADPI  360
RWPDSPWRLL QVTWDEPDLL QNVKRVSPWL VELVSNMPTM HISPFSPPRK KFRLPQHPDF  420
PFDGQLPMPA FSSNHFLGPN GPFGCLPDNP PPAGMQGARH AQYGLSLSDL HFNKLQSSGF  480
FPVGFPPLDH AAMPSRPNNS PAIHKPCSTE EISCLLTMGN SAETLKKSDS GKAPLVLFGK  540
PILTEQQISL SCSGDTVSPV GTGNSSSDGN PHNKLGNTSD SSGPNLNLHG TLENSPRDGS  600
QPEPNLETGH CKVFMESEDV GRTLDLSLLE SYEKLNKKLA DMFGIENSEV LNHVLYRDVT  660
GAVKHLGDEP FSEFMKSARR LKILMDSSSN NVGV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein