PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019191404.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C3H

Protein Properties

Length: 703aa MW: 78039.6 Da PI: 5.2042

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019191404.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25	3.3e-08	131	153	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ff++ G+C GdrC+F Hgp XP_019191404.1 131 VPCIFFQK-GICLKGDRCPFLHGP 153 79****.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 703 aa Download sequence
MDGSHRPNPQ APPPPAGAAA AAAAAAPPMT SAEEEAIKKN TDCVYFLASP LTCKKGSECE 60 YRHSDNARLN PRDCWYWLNG NCLNPKCAFR HPPLDGLLGN QAPNPVEPFM PPVQAPVPAA 120 QVPYFANKQG VPCIFFQKGI CLKGDRCPFL HGPNTVINKG PPQKQGVLPA TEVSSKKTFG 180 GLEKCTQEKN TLQNSVLKTG EMPPVAKPVA KEGPALAKNH FLVDKNMAPI SGIDNEPLKY 240 KPTSVPPNGN LVGRSSQMQH QHVFDDPGSM HNKDEEISRE ASPGFDVLVD DELRDSDYYP 300 VEDQYGGAGD HERSEYDIDP AADYSIGDID QDMYRDAHGY DSYAHYGWEQ RGASSERKPG 360 RSSHPERRYG NADSSDQFSE SDLRHRLSKH RRVNGLRSVV SHEQTRERHV EEQSYRSSRR 420 ESNNLSSHES SLSNRLRGRI KIPGRSSSPT DVAEIRSDRE MDRGRDRGRF SHGRPQVPSH 480 QGRLQDRIKG RVPEDLNYVG RNIRGPPLRG DMLSETNVNF AGPKSLAELK GKKGGIEGNG 540 PQSLGKRKLQ KFDDQQQSGG DLSFEGPKPL KEILKRKRRA GENEDYNQQE RTTTMEPYSS 600 HKNEADHAAA QKEDFQPPSG NNTGVLENKS AEDLEVEDGM LADEGEYQDG EGYDPQDGDY 660 NYEQVDGEDV NLDEAENGDQ DEEYLEDDDD ADDFAKKMAV VFS

Sequence ? help Back to Top

Protein Sequence Length: 703 aa Download sequence

MDGSHRPNPQ APPPPAGAAA AAAAAAPPMT SAEEEAIKKN TDCVYFLASP LTCKKGSECE  60
YRHSDNARLN PRDCWYWLNG NCLNPKCAFR HPPLDGLLGN QAPNPVEPFM PPVQAPVPAA  120
QVPYFANKQG VPCIFFQKGI CLKGDRCPFL HGPNTVINKG PPQKQGVLPA TEVSSKKTFG  180
GLEKCTQEKN TLQNSVLKTG EMPPVAKPVA KEGPALAKNH FLVDKNMAPI SGIDNEPLKY  240
KPTSVPPNGN LVGRSSQMQH QHVFDDPGSM HNKDEEISRE ASPGFDVLVD DELRDSDYYP  300
VEDQYGGAGD HERSEYDIDP AADYSIGDID QDMYRDAHGY DSYAHYGWEQ RGASSERKPG  360
RSSHPERRYG NADSSDQFSE SDLRHRLSKH RRVNGLRSVV SHEQTRERHV EEQSYRSSRR  420
ESNNLSSHES SLSNRLRGRI KIPGRSSSPT DVAEIRSDRE MDRGRDRGRF SHGRPQVPSH  480
QGRLQDRIKG RVPEDLNYVG RNIRGPPLRG DMLSETNVNF AGPKSLAELK GKKGGIEGNG  540
PQSLGKRKLQ KFDDQQQSGG DLSFEGPKPL KEILKRKRRA GENEDYNQQE RTTTMEPYSS  600
HKNEADHAAA QKEDFQPPSG NNTGVLENKS AEDLEVEDGM LADEGEYQDG EGYDPQDGDY  660
NYEQVDGEDV NLDEAENGDQ DEEYLEDDDD ADDFAKKMAV VFS