PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019191343.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 471aa MW: 50840.5 Da PI: 9.6841

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019191343.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.8e-05	60	82	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H XP_019191343.1 60 FICEICNKGFQRDQNLQLHRRGH 82 89*******************88 PP
2	zf-C2H2	12.2	0.00055	137	159	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ XP_019191343.1 137 WKCDKCSKKYAVQSDWKAHSKTC 159 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence
MMSGDVFSIP SSLKPIPPPP QDPNPNPKPN PSSKKKRNLP DPDAEVIALS PKTLMATNRF 60 ICEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RAKTEVVKRK VYICPEKTCV HHDPSRALGD 120 LTGIKKHFSR KHGEKKWKCD KCSKKYAVQS DWKAHSKTCG TREYKCDCGT LFSRKDSFIT 180 HRAFCDALAE ESARITSVAA NTLNFRNNSD SLMNPQQNLP HGGGGGGIPQ FPAAFQQKPR 240 LSLWLDQAAN ANSHHHLQMP ANSAGIFGAG SGSLPEILQM GNSPMMYGSS PMESFGTSNL 300 SLSPLAPQGL QETEGMGISK GMAETLSSMY SDSLQTSSKS SAGGPMSATA LLQKAAQMGS 360 TKSAPTAFFG NSFGLMTSSS SSSNNRSGEL QHMVFPKESG FDSGAAAAAE HSSCLMQRQP 420 QGVSLNGVNV NAHHLTRDFL GMGSEDGRPF LAEELAKFAS SMGLSHFSSG H

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence

MMSGDVFSIP SSLKPIPPPP QDPNPNPKPN PSSKKKRNLP DPDAEVIALS PKTLMATNRF  60
ICEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RAKTEVVKRK VYICPEKTCV HHDPSRALGD  120
LTGIKKHFSR KHGEKKWKCD KCSKKYAVQS DWKAHSKTCG TREYKCDCGT LFSRKDSFIT  180
HRAFCDALAE ESARITSVAA NTLNFRNNSD SLMNPQQNLP HGGGGGGIPQ FPAAFQQKPR  240
LSLWLDQAAN ANSHHHLQMP ANSAGIFGAG SGSLPEILQM GNSPMMYGSS PMESFGTSNL  300
SLSPLAPQGL QETEGMGISK GMAETLSSMY SDSLQTSSKS SAGGPMSATA LLQKAAQMGS  360
TKSAPTAFFG NSFGLMTSSS SSSNNRSGEL QHMVFPKESG FDSGAAAAAE HSSCLMQRQP  420
QGVSLNGVNV NAHHLTRDFL GMGSEDGRPF LAEELAKFAS SMGLSHFSSG H

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03150.1	1e-105	C2H2 family protein