PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019191124.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 538aa    MW: 59707.5 Da    PI: 5.6247
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019191124.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS422.82.9e-1291685382374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     +elL++cAeavs+ d + a+ l++ l++++s +gdpmqRl ay++e+L+ar++ s+s +yk+l+++e s   sse l++++++++++P++kf+++
  XP_019191124.1 168 KELLFACAEAVSDADISTAEVLMNVLEKRVSVSGDPMQRLSAYMLEGLRARILASGSIIYKKLKCKEPS---SSELLSYMQVLYNICPYFKFAYM 259
                     589*****************************************************************9...9********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                       N  I ea+ +e+r+Hi+Df++ qG QW+ L+++La+Rp+gpp +lRiTgv++++s   +   l+ +gerLakfA+e+gvpfef+  +  + ++
  XP_019191124.1 260 SSNVVIKEAMMNENRIHIVDFQVAQGSQWMFLIKSLADRPGGPPlMLRITGVDDSQSAhaRGGGLQLVGERLAKFAKECGVPFEFHS-AGISGSE 353
                     ****************************************999999********9988889999***********************.7889*** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +ele+L v+pgEalaVn+ ++lh+++desvs+ ++rd++L+lvkslsPk+v+v+eqe+++n+++Fl rf e+l+yy+a+f+s++a  pr++++ri
  XP_019191124.1 354 VELENLWVQPGEALAVNFPYMLHHMPDESVSTMNHRDRLLRLVKSLSPKIVTVIEQESNTNTTPFLPRFRETLDYYTAMFESIDAARPRDDRQRI 448
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     + E+++++r+ivn++acega+r+erhe ++kW++r+++aGF+p pls ++ + ++++l++++ + + + + +g+l+lgWk+r+L s SaWr
  XP_019191124.1 449 SAEEHCVARDIVNIIACEGADRVERHEPFGKWSMRFTMAGFTPCPLSPSVGEAMRHMLQEYSPN-FGIAQGHGALYLGWKNRALASSSAWR 538
                     **************************************************************55.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    
MQASQGPQSS SSSVQRFYHQ PQQYYAAFHV LNNDVSNESG SVGEQGFFQA QNEQFFTLDS  60
APAGIDSVYY DSPPAASVSS NRSAFSPQCS QSYMSDNTTC GSPLSGCSGV VDGNELRHVL  120
RELENKLLGP ESEIDDNYSC SFSDAVPKSS SVMKWKRMLE IAPSLDTKEL LFACAEAVSD  180
ADISTAEVLM NVLEKRVSVS GDPMQRLSAY MLEGLRARIL ASGSIIYKKL KCKEPSSSEL  240
LSYMQVLYNI CPYFKFAYMS SNVVIKEAMM NENRIHIVDF QVAQGSQWMF LIKSLADRPG  300
GPPLMLRITG VDDSQSAHAR GGGLQLVGER LAKFAKECGV PFEFHSAGIS GSEVELENLW  360
VQPGEALAVN FPYMLHHMPD ESVSTMNHRD RLLRLVKSLS PKIVTVIEQE SNTNTTPFLP  420
RFRETLDYYT AMFESIDAAR PRDDRQRISA EEHCVARDIV NIIACEGADR VERHEPFGKW  480
SMRFTMAGFT PCPLSPSVGE AMRHMLQEYS PNFGIAQGHG ALYLGWKNRA LASSSAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0GRAS family protein