PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019190976.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 321aa    MW: 35725.8 Da    PI: 4.4681
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019190976.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1661e-20124210291
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                      Yn+YA++vGFsvrk k+ ++  ++++++++f Csk g++ + +     ++ +++  rtgC a+++   + +g+w vtk e+ HnHel+p
  XP_019190976.1 124 LYNDYAYRVGFSVRKGKQCYKGSTKTVKMKKFLCSKAGHKVKVHGV---KSYSKMDLRTGCGASVQFDVDGNGVWTVTKHEKGHNHELCP 210
                     7********************9*****************9998766...899999*********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    
MEEATDQAEL NMNIDQAELN MNIDEATDQA ELNIDEATDQ AELNMNIDQA ELNIVEATDQ  60
AELNIDEAKD QAELNIDEAK DQAELNIDEA KDQATLNIDG SSPIPVDQDL VGVSVSNVDE  120
AYELYNDYAY RVGFSVRKGK QCYKGSTKTV KMKKFLCSKA GHKVKVHGVK SYSKMDLRTG  180
CGASVQFDVD GNGVWTVTKH EKGHNHELCP SDKSHLLRSH RRVVKNQFLC LNDLKSEVAL  240
ADDIRLLKQQ SEGSPSVGVA SSIWAVEMTR KFQRLIVSCQ DNNVARQICE EAFENAKRRI  300
EAEVGCVHIE EFVVSSSNDI V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.12e-12FAR1 family protein