PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019190952.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GATA

Protein Properties

Length: 529aa MW: 58440.7 Da PI: 6.6388

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019190952.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	50.1	3.9e-16	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ XP_019190952.1 7 CYHCGVTNTPLWRNGPPEKPVLCNACGSRWRTKGT 41 **************88888*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence
MGKQGPCYHC GVTNTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RAEPDDFEDY 60 RGSKVKTTPI RIKEAKVLKR KHIYDYPEVG VPTDYSQVLS KGLDEDTSNR SSSGSAVSNS 120 ESCAQFAGTE LSDLTGPAQP NIWDTMVPSK KRTCVGRPKP SPVEKLTKDL CTILHEQQSS 180 YFSGSSEEDL LFESDKPMVS VEIGHGSMLI RHPSSIGREE ESEASSLSVD NKQNPVNEAY 240 SPWPTPSVHI HNKVFNSPSV GTETIKKPTG HGIDQELVKR DKDRLEKLQM LGHHNSPLCY 300 VDLKDIVNFD EFTSKLTTDE QRQLLKCLPS VDTSAPPDSF RGMFESAQFK ENLSCFQKLL 360 AEGVLDNSLS GVKIEDCRTL KRFAMCYLTK SKWVEQYNLL KDVKCKNSSN GFGVAGLPND 420 VGIGHSINVK RSLDGQNQKI SATTIMKSPK RVASKDSYDE NKENDGSLFS PKCLFALPPY 480 SSSPALESSD DQDLLLDVPS NSSFPQAELL LPSQFDPQAS TNSSSVFLK

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence

MGKQGPCYHC GVTNTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RAEPDDFEDY  60
RGSKVKTTPI RIKEAKVLKR KHIYDYPEVG VPTDYSQVLS KGLDEDTSNR SSSGSAVSNS  120
ESCAQFAGTE LSDLTGPAQP NIWDTMVPSK KRTCVGRPKP SPVEKLTKDL CTILHEQQSS  180
YFSGSSEEDL LFESDKPMVS VEIGHGSMLI RHPSSIGREE ESEASSLSVD NKQNPVNEAY  240
SPWPTPSVHI HNKVFNSPSV GTETIKKPTG HGIDQELVKR DKDRLEKLQM LGHHNSPLCY  300
VDLKDIVNFD EFTSKLTTDE QRQLLKCLPS VDTSAPPDSF RGMFESAQFK ENLSCFQKLL  360
AEGVLDNSLS GVKIEDCRTL KRFAMCYLTK SKWVEQYNLL KDVKCKNSSN GFGVAGLPND  420
VGIGHSINVK RSLDGQNQKI SATTIMKSPK RVASKDSYDE NKENDGSLFS PKCLFALPPY  480
SSSPALESSD DQDLLLDVPS NSSFPQAELL LPSQFDPQAS TNSSSVFLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	1e-144	GATA family protein