PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019190622.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ARF
Protein Properties Length: 897aa    MW: 99166.3 Da    PI: 6.4699
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019190622.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.94.6e-24129230199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_019190622.1 129 FCKTLTASDTSTHGGFSVPRRAAEKVfpqldysQQPPA--QELIARDLHENEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--WNE 219
                     99***********************9*****8544444..48************************************************..889 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_019190622.1 220 KNQLLLGIRRA 230
                     9999****997 PP
2Auxin_resp117.11.5e-38255338183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F++++nPras+seFvv+++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdl+p rWpnS+Wrs+k
  XP_019190622.1 255 AAHAAATNSRFTIFFNPRASPSEFVVPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLEPARWPNSHWRSVK 338
                     79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 897 aa     Download sequence    
MKLSSPGFNQ QSPPEGEKKC LNSELWHACA GPLVSLPAVG SRVVYFPQGH SEQVAASTNR  60
EVDAHIPNYP SLPPQLICQL HNVTMHADLE TDEVYAQMTL QPLSPQEQKE ASFLPMDLGT  120
PSKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPQLDY SQQPPAQELI ARDLHENEWK  180
FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVIFIWNEK NQLLLGIRRA NRPQTIMPSS  240
VISSDSMHLG LLAAAAHAAA TNSRFTIFFN PRASPSEFVV PLAKYVKAVY HTRISVGMRF  300
RMLFETEESS VRRYMGTITG ISDLEPARWP NSHWRSVKVG WDESTAGDRQ PRVSLWEIEP  360
LITFPMYPSP FLRLKRPWPP GLPSFNGMKD EDMMMNSPLL WLRDAGDRGI QSLNFQGIGG  420
VTPWMQPSLP MLGMQNDVYH AMATAALQEM RVVDPSKQNL SSFLQFQQAN GVPHRSPTGL  480
MQQPQILQQS QPHQPTFLSN LHETQPLPPI SQPLLQQQLQ HQNSFNSIQQ QQRPQQASSQ  540
QQAQCIDQQV SSVGSVMSQL ASSSSQSQPP SLQTICSMQP QTFSDSTVNP VVNPLQCLLG  600
SVPPYETSHI LNASRSSNLM SPTGWPAKRI AVDPVLPSQC ISSQVDQLGA PNMNISQNAV  660
SLPPFPGSRV CSEDQEGSND PQNHLLFGVN IDSSSLLMQN GMSSLKGVGS VCDSTTVPFV  720
SSSYMSNSGN DFPLNPGMTP PVCVEESSVM QNSENLGPEN PPNKTFVKVY KSGSLGRSLD  780
ITKFSSYHEL RSELAQMFGL EGLLEDPLRS GWQLVFVDRE NDVLLLGDDP WPEFVNSVWC  840
IKILSPQEVQ QMGKRGLELL SSIPMSQMSN GSCNDFGSPP ESRKMISGMA SVGSLDY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein