PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019190569.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 430aa MW: 47147.2 Da PI: 9.3612

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019190569.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.5	1.2e-05	65	87	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_019190569.1 65 FVCEICNKGFQRDQNLQLHRRGH 87 89*******************88 PP
2	zf-C2H2	12.1	0.00059	142	164	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + XP_019190569.1 142 WKCDKCSKRYAVQSDWKAHSKIC 164 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence
MIKGMMVDES MSNLTSASNE ASISSTSNNP AQSAAKKKRN LPGNPDPEAE VVALSPRALL 60 ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLKQRNKNE VIKKKVYVCP EASCVHHDPS 120 RALGDLTGIK KHYSRKHGEK KWKCDKCSKR YAVQSDWKAH SKICGTREYR CDCGTLFSRR 180 DSFITHRAFC DALAEESVRA ISAPSNNPLL SSHIALQQPF PVLKQEPPPP PPPSFRPLRA 240 GAAQPELPPW LACPPQPADL STHLFGLHEN PNMSATALLQ KAAQMGVTTS STNNNNNNNN 300 SLVGAASGNV IGPHHQGPVH MSATPPGGFF SEELALASFG LSNKPQPHHA NLTSGCMETS 360 IPPPPPRNMI INSASTRDFL TLGAFPHHHH QRDTFLNMAG LDHMAGPSSS SSSYDHQNQN 420 QNQNQPPWLN

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence

MIKGMMVDES MSNLTSASNE ASISSTSNNP AQSAAKKKRN LPGNPDPEAE VVALSPRALL  60
ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLKQRNKNE VIKKKVYVCP EASCVHHDPS  120
RALGDLTGIK KHYSRKHGEK KWKCDKCSKR YAVQSDWKAH SKICGTREYR CDCGTLFSRR  180
DSFITHRAFC DALAEESVRA ISAPSNNPLL SSHIALQQPF PVLKQEPPPP PPPSFRPLRA  240
GAAQPELPPW LACPPQPADL STHLFGLHEN PNMSATALLQ KAAQMGVTTS STNNNNNNNN  300
SLVGAASGNV IGPHHQGPVH MSATPPGGFF SEELALASFG LSNKPQPHHA NLTSGCMETS  360
IPPPPPRNMI INSASTRDFL TLGAFPHHHH QRDTFLNMAG LDHMAGPSSS SSSYDHQNQN  420
QNQNQPPWLN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-114	C2H2 family protein