PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019190565.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LBD | ||||||||
Protein Properties | Length: 242aa MW: 26519.9 Da PI: 9.4101 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 122.5 | 2.2e-38 | 46 | 146 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCa+Ck++rrkC++dC+lap+fpa ++++f nvhklFG++n+++ l+a+++ + +d m s++yeA+ara dPv G++g+i++l+qql+ + +el+ XP_019190565.1 46 ACAVCKHQRRKCPPDCPLAPHFPAYKQRDFLNVHKLFGVRNLTRALAAIDKRKSHDFMVSVIYEANARAADPVGGCLGLIHNLNQQLKYSTVELD 140 7********************************************************************************************** PP DUF260 96 llkeel 101 ++++l XP_019190565.1 141 IVNQQL 146 999985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence |
MVNTANNPTN TYPKASVPSP PPPPYTLSFK HTAETHASAA GGGGGACAVC KHQRRKCPPD 60 CPLAPHFPAY KQRDFLNVHK LFGVRNLTRA LAAIDKRKSH DFMVSVIYEA NARAADPVGG 120 CLGLIHNLNQ QLKYSTVELD IVNQQLAFYR SRQMAAAAFD PSSQLGSSSN TPDFVRNDKQ 180 HITDHRFHRF PEKQQFDNGE VSFAGSSVKL SDGIGLIDNS IKAKEEGEED LKNAASKFSL 240 RK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 96 | 100 | KRKSH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 2e-32 | LBD family protein |