PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019190397.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C3H

Protein Properties

Length: 945aa MW: 106722 Da PI: 8.7606

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019190397.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.6	3.2e-06	289	309	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f + G C+ G++C+F+H+ XP_019190397.1 289 PCKDFVK-GKCRWGASCRFSHS 309 8****.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 945 aa Download sequence
MLVNKGVMGE SVRKRRSMWD TEENFSRHEL NAKNAWVGKC DYPSHDGRSY QEQVSSKTDN 60 SSKRHSGWNH SPQNSLLQTS QRISKDVERL PETEEHKREK FYHENMSPTF DGRRQLRNSQ 120 FPEHGLSQSR RHPGRGRSRS PGRAKGRSRS RSWSRDRRWR SRSRSRSRDK GNLRGRSRSS 180 SPPNYKGDPY GWDDRQIGSR MSSKVCRDFA NGKCRRGGEC WFFHPDNFKN RDGYSSEYNL 240 SERWGSRNEN GDASRYADTE ALEVHFRGKI PDAYNIEHEH PRNNRSMIPC KDFVKGKCRW 300 GASCRFSHSG TSGHNYDSSI RNASSDYDRE HEPSKTSKPL CKYFVAGKCY SENCKFSHDG 360 PTPSNVEMRP SDDIGGHRLD EKSDSWVCPK WNDAEMDSSF VRASRRGENV AKSDNSGAVD 420 TDRLNHIGDH SIADTNKLWN KPVWDDTARA SNLEKNSEWD DTALRTNPTV TVSVDQTNSR 480 WTYSLENERA IWQNTASCEG RDATPNVIAA KTSESILENL TNNEENNILS QASQFRNLNG 540 SSIHGERLDT MKETSGIILS TKVMQPCLSS NRFQSYPFED SGKTIISNVS NDLNNSRQSI 600 HPVSLPEQSF NETSEMASRG SEYSSFLDGA AQGEARLHAI PSNGHGIRSN EIRQSCQKEA 660 ATRPEVLELS ALQNLSGAIF SLQTSQLHGS LASLTKKFEH EPAKSQLHAV LPSVVPSDSN 720 SELLPTYNAV YTQPNPIINT PDLCHAHSDG FQWGTPGNYV MPAANASYLD KQETSVSLKQ 780 SNELSALNSE NGNIDKFGDS NVEYTKDLCL KLQEAVAKSE VKRNNKLVAK ECDDGQENKN 840 SHNANGHSKD EEVNGNKDDK VIRLFKNSLI EFVKEILKPT WKEGRMSREV HKTIVKKVVD 900 KVTGSIQGDH FPKTQDKIEQ YLSNSKAKIN KLAQAYVERS LKANT

Sequence ? help Back to Top

Protein Sequence Length: 945 aa Download sequence

MLVNKGVMGE SVRKRRSMWD TEENFSRHEL NAKNAWVGKC DYPSHDGRSY QEQVSSKTDN  60
SSKRHSGWNH SPQNSLLQTS QRISKDVERL PETEEHKREK FYHENMSPTF DGRRQLRNSQ  120
FPEHGLSQSR RHPGRGRSRS PGRAKGRSRS RSWSRDRRWR SRSRSRSRDK GNLRGRSRSS  180
SPPNYKGDPY GWDDRQIGSR MSSKVCRDFA NGKCRRGGEC WFFHPDNFKN RDGYSSEYNL  240
SERWGSRNEN GDASRYADTE ALEVHFRGKI PDAYNIEHEH PRNNRSMIPC KDFVKGKCRW  300
GASCRFSHSG TSGHNYDSSI RNASSDYDRE HEPSKTSKPL CKYFVAGKCY SENCKFSHDG  360
PTPSNVEMRP SDDIGGHRLD EKSDSWVCPK WNDAEMDSSF VRASRRGENV AKSDNSGAVD  420
TDRLNHIGDH SIADTNKLWN KPVWDDTARA SNLEKNSEWD DTALRTNPTV TVSVDQTNSR  480
WTYSLENERA IWQNTASCEG RDATPNVIAA KTSESILENL TNNEENNILS QASQFRNLNG  540
SSIHGERLDT MKETSGIILS TKVMQPCLSS NRFQSYPFED SGKTIISNVS NDLNNSRQSI  600
HPVSLPEQSF NETSEMASRG SEYSSFLDGA AQGEARLHAI PSNGHGIRSN EIRQSCQKEA  660
ATRPEVLELS ALQNLSGAIF SLQTSQLHGS LASLTKKFEH EPAKSQLHAV LPSVVPSDSN  720
SELLPTYNAV YTQPNPIINT PDLCHAHSDG FQWGTPGNYV MPAANASYLD KQETSVSLKQ  780
SNELSALNSE NGNIDKFGDS NVEYTKDLCL KLQEAVAKSE VKRNNKLVAK ECDDGQENKN  840
SHNANGHSKD EEVNGNKDDK VIRLFKNSLI EFVKEILKPT WKEGRMSREV HKTIVKKVVD  900
KVTGSIQGDH FPKTQDKIEQ YLSNSKAKIN KLAQAYVERS LKANT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	158	166	RWRSRSRSR
2	158	168	RWRSRSRSRSR
3	158	170	RWRSRSRSRSRDK
4	160	168	RWRSRSRSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	6e-13	C3H family protein