PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019190321.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 530aa MW: 60833.3 Da PI: 8.2221

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019190321.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.6	1.3e-20	47	140	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y++YA+ +GF+vrks k+ r + i k+++vC++eg+++ + ++ t++++r+++++r+gC ak++ +++++g+++v+k+e+ H+H l+ XP_019190321.1 47 YYKTYASVTGFDVRKSPDIKN-RYEIILKKKLVCNREGFKDAKPNNtteqntTTQTKRRHPSNRVGCMAKIVFRRDSTGRYVVKKFEEGHTHCLC 140 8**************9999.6666***********99999999999999999********************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 530 aa Download sequence
MEEGEKSQHC VMDESQNGTN IWVTACDPLI KLAVDQVFAT LEDSIAYYKT YASVTGFDVR 60 KSPDIKNRYE IILKKKLVCN REGFKDAKPN NTTEQNTTTQ TKRRHPSNRV GCMAKIVFRR 120 DSTGRYVVKK FEEGHTHCLC EESYKPFLKG NMKLDIGHQQ FIANCSKVNI GASKSHDLYT 180 EMVGGVENVG ATQQDFKNYR REILAYMQGG DAQMLISKYL DMKSDYDDMY FEYEANENDQ 240 LARVLWANGM ARNYMRITVT LVRVHDSKRT GVRVRYSLVF VPFTGIDHHK KCVTFAAALI 300 AREDVDSYCW ILRNFRNAMG STPPLTITDQ NPVMKVAIAR EFPETRHCYC ICLTTAKFEV 360 AWKGVIEKFG LMENPWLNRM YDERASWIPA CFEGVFMGGL VRTTSRSEAE NRIFRSNTSK 420 HLCVSEFFNR IESTIRKQRL TQTQLSGASI AQTPPYKTQL RIERAAASLY TLTVFYDVQK 480 EICSGCFDCR VRAVTHGEAG NTYEAEDEHE IRYTVFVENG TRTTTCECRM

Sequence ? help Back to Top

Protein Sequence Length: 530 aa Download sequence

MEEGEKSQHC VMDESQNGTN IWVTACDPLI KLAVDQVFAT LEDSIAYYKT YASVTGFDVR  60
KSPDIKNRYE IILKKKLVCN REGFKDAKPN NTTEQNTTTQ TKRRHPSNRV GCMAKIVFRR  120
DSTGRYVVKK FEEGHTHCLC EESYKPFLKG NMKLDIGHQQ FIANCSKVNI GASKSHDLYT  180
EMVGGVENVG ATQQDFKNYR REILAYMQGG DAQMLISKYL DMKSDYDDMY FEYEANENDQ  240
LARVLWANGM ARNYMRITVT LVRVHDSKRT GVRVRYSLVF VPFTGIDHHK KCVTFAAALI  300
AREDVDSYCW ILRNFRNAMG STPPLTITDQ NPVMKVAIAR EFPETRHCYC ICLTTAKFEV  360
AWKGVIEKFG LMENPWLNRM YDERASWIPA CFEGVFMGGL VRTTSRSEAE NRIFRSNTSK  420
HLCVSEFFNR IESTIRKQRL TQTQLSGASI AQTPPYKTQL RIERAAASLY TLTVFYDVQK  480
EICSGCFDCR VRAVTHGEAG NTYEAEDEHE IRYTVFVENG TRTTTCECRM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-48	FAR1 family protein