PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019189955.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 267aa MW: 30538.8 Da PI: 8.376

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019189955.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.5	9.5e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l+ +v+++G +W+ ++ g+ R++k+c++rw +yl XP_019189955.1 14 KGTWTPEEDRKLAAYVTRYGCWNWRQLPKFAGLARCGKSCRLRWMNYL 61 799***************99**********************97 PP
2	Myb_DNA-binding	59.7	6.5e-19	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eEde +v+ ++qlG++ W++Ia++++ gRt++++k++w++ XP_019189955.1 67 RGNYTKEEDETIVRMHEQLGNK-WSAIAAHLP-GRTDNEIKNHWHT 110 899*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence
MVRTPCCDKS GFKKGTWTPE EDRKLAAYVT RYGCWNWRQL PKFAGLARCG KSCRLRWMNY 60 LRPNIKRGNY TKEEDETIVR MHEQLGNKWS AIAAHLPGRT DNEIKNHWHT SLKKNSRKPS 120 SSSPTQNPQP KKRSSSSTRT KRQDRANSSE NPIISTHEIL ESSQWSPQPS SSETSSSSSS 180 SSTTTTTTTK SDGIIHDDQT VQGEFGHMEC DESFWSEPFI MDNFWSNNEL VVPSIDFGLL 240 SPPSPFRDYD FLGSFDHFPE GFNNLNW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31180.1	1e-54	MYB family protein