PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019189757.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 541aa MW: 59471.9 Da PI: 7.1219

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019189757.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	53.9	3.1e-17	239	288	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lr ++P++ ++K +Ka+ L +++eYIk Lq XP_019189757.1 239 RSKHSATEQRRRSKINDRFQMLRGIIPHS----DQKRDKASFLLEVIEYIKFLQ 288 889***********************9....9*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence
MELPQPRAFG TEGGKTTHDF LSLYSSLEQD SRPPQGGFLR THDFLQPLEG AGKSVGKEEI 60 DDEVEMRDVE KPLPPAHPAV EHVLPGGIGT YSISYLHQRS PKPNDENSDY SSCTRNESTL 120 KKGMAKKDNF AGDFRAVLRE TGMNKGGGSQ LGQPSQTPSN LKNKTATFSS FLASQQFSEQ 180 NNQSFLDMIA SSKSVREDDG DLEEEEEFVI KKEQSLHPKG NLSAKVDEKS SDQKPNTPRS 240 KHSATEQRRR SKINDRFQML RGIIPHSDQK RDKASFLLEV IEYIKFLQEK VHKYEGSYQG 300 CRDNETSKLP WSKCHSDAQG YIDHSQGKNN VSGPALMFGA KFGGTRPWIS LPIPISEQNI 360 ESNMKLACPK ENDHQIENNE KPVSLPMLPN AFPFCGTSNI VAQHSPKLAL GRDASTTSRH 420 QSQCSSDRSH ITSQAVASDK SKDEDLTVES GTISISSMYS QGLLNTLTKA LENSGVDLSQ 480 ASISVHVDLG KRSNGRLNNS SASTLKGDDV STSNQPMPHS ITSTSQGECG QAQKRLKTSR 540 G

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence

MELPQPRAFG TEGGKTTHDF LSLYSSLEQD SRPPQGGFLR THDFLQPLEG AGKSVGKEEI  60
DDEVEMRDVE KPLPPAHPAV EHVLPGGIGT YSISYLHQRS PKPNDENSDY SSCTRNESTL  120
KKGMAKKDNF AGDFRAVLRE TGMNKGGGSQ LGQPSQTPSN LKNKTATFSS FLASQQFSEQ  180
NNQSFLDMIA SSKSVREDDG DLEEEEEFVI KKEQSLHPKG NLSAKVDEKS SDQKPNTPRS  240
KHSATEQRRR SKINDRFQML RGIIPHSDQK RDKASFLLEV IEYIKFLQEK VHKYEGSYQG  300
CRDNETSKLP WSKCHSDAQG YIDHSQGKNN VSGPALMFGA KFGGTRPWIS LPIPISEQNI  360
ESNMKLACPK ENDHQIENNE KPVSLPMLPN AFPFCGTSNI VAQHSPKLAL GRDASTTSRH  420
QSQCSSDRSH ITSQAVASDK SKDEDLTVES GTISISSMYS QGLLNTLTKA LENSGVDLSQ  480
ASISVHVDLG KRSNGRLNNS SASTLKGDDV STSNQPMPHS ITSTSQGECG QAQKRLKTSR  540
G

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.2	6e-73	bHLH family protein