PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019189016.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 748aa    MW: 81435.5 Da    PI: 6.3119
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019189016.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS327.62.4e-1003847472374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfsh 95 
                     +++L++ Ae v+sg+  laq +Larl+++ sp g+p+qR+a+y +e L+  l++ ++++     pps++ + + + ++ a+k fse+sPi  f++
  XP_019189016.1 384 IDQLFKTAELVQSGNPILAQGILARLNHHLSPIGKPFQRAAFYCKESLQLLLQNATNNMNPNPnPPSSSVPFSLIFKIGAYKSFSEISPISPFAN 478
                     689***************************************************77776654424444445559********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +t+Nqa+lea++g +r+ i+Dfdi++G+QW++L+q+La R++g+psl+iT+++ p+ +++ el  t+e+L +fA+e+++ fef++l  ++l++ +
  XP_019189016.1 479 FTCNQALLEALDGFDRIRIVDFDIGYGGQWASLMQELALRSGGSPSLKITVLALPAMHDQLELGLTRENLIHFASEINMAFEFEILSIDSLNSTS 573
                     **************************************************************************************999998886 PP

            GRAS 191 le.eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                      +  L+++ +Ea+aVnl +  ++++    +l++  + vL++vk+l Pk+vv v++ +d+++  F +++++al+yy+ l++sl+a    + ++ +k
  XP_019189016.1 574 WSlPLHISDNEAIAVNLPVGCFTTY----QLSH--PLVLRFVKQLMPKIVVSVDRVCDRTDLLFPNHVIHALQYYANLLESLDAV-NVNFDALQK 661
                     653589999**************99....4444..77*********************************************665.3466999** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +Er+ll++ i+ +++ + ++     e+ ++Wr  + ++GF+p+++s+++++qa++++++++++g++ve+++ slvl+W++++L+svSaWr
  XP_019189016.1 662 IERFLLHPGIERIIMGRYRS----PEKTQHWRTLFLSSGFSPLTFSNFTESQAECVVKRTPVRGFHVEKRQSSLVLCWQRKELISVSAWR 747
                     ****************9999....9****************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 748 aa     Download sequence    
MKGMPFPFEF ERKGVLELGT VLGHRNHSNC VSGIPGNSVL GGFWNKDCVV GSPGGSNSEP  60
TSVLDRPLAS SSTLSSSCGG GGGGGGGSTD TARVAAVSGN PASKWQQDNT TATSSNAGGG  120
ESELLQPVPP SLEFGGAAAP EKCGMEEWDS VLSESVAASP SQEPLLRWIM GDVDDPSMAN  180
LNKVLQVSGP GEYDFNGGFD PAVDQGFGGV SGESFIPISG SNFPANRLPV PNPPPPLPGF  240
KFPAGHPQQP PPLFPSVSNN LGAAAFNPAL LETADLKPQI FNPQLLINQH PQNPSFLMPL  300
PYSRQEQSLL APPQAKRHNP GGNLEPPGPQ IPRPLFSDQQ QQLLPHQLQL LPNYLHPPPQ  360
QRPKPPEMAG EEMGHFHQHQ QAIIDQLFKT AELVQSGNPI LAQGILARLN HHLSPIGKPF  420
QRAAFYCKES LQLLLQNATN NMNPNPNPPS SSVPFSLIFK IGAYKSFSEI SPISPFANFT  480
CNQALLEALD GFDRIRIVDF DIGYGGQWAS LMQELALRSG GSPSLKITVL ALPAMHDQLE  540
LGLTRENLIH FASEINMAFE FEILSIDSLN STSWSLPLHI SDNEAIAVNL PVGCFTTYQL  600
SHPLVLRFVK QLMPKIVVSV DRVCDRTDLL FPNHVIHALQ YYANLLESLD AVNVNFDALQ  660
KIERFLLHPG IERIIMGRYR SPEKTQHWRT LFLSSGFSPL TFSNFTESQA ECVVKRTPVR  720
GFHVEKRQSS LVLCWQRKEL ISVSAWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-137GRAS family protein