PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019188927.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

SBP

Protein Properties

Length: 314aa MW: 34031.4 Da PI: 8.7761

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019188927.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.4	3.1e-41	182	259	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adl++ak+yhrrhkvCe+hska++v+++gl+qrfCqqCsrfh l+efD++krsCr+rLa+hn+rrrk+q+ XP_019188927.1 182 RCQAEGCNADLTHAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLTEFDNGKRSCRKRLADHNRRRRKNQQ 259 6**************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence
MLDYEWGNQS AAVMFSDETG HESDQNRQYF DPYATQTAFN DNQAAAAAAA TAALVGSNAN 60 FVTGPHQFHN PAAAAQGNAH HNHHLAAAYY DPRAYGGASF GHAAAAAAGH APLLSLEPSA 120 PGGYMVVPKS EPLVGGIDFG SSSRIGLNLG GRTYFSSAED DFVNRLYRRS RTVDPGAVNS 180 PRCQAEGCNA DLTHAKHYHR RHKVCEFHSK AATVIAAGLT QRFCQQCSRF HLLTEFDNGK 240 RSCRKRLADH NRRRRKNQQP NQEPSTNKTH HLENPPTSSS ANSFARSPAD SGVHSTSSVT 300 VAVSPPRISL DYFR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	1e-65	SBP family protein