PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019188490.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 537aa MW: 58535 Da PI: 6.2696

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019188490.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48.6	1.4e-15	330	376	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P + K +Ka++L A+eY+ksLq XP_019188490.1 330 VHNLSERRRRDRINEKMRALQELIPRC-----NKSDKASMLDDAIEYLKSLQ 376 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 537 aa Download sequence
MNHCVPDFDM DEDFNLPPTA TSSSGLTRHK KSAMGEEDIM ELLWQNGQVV VHSQNHRSFH 60 KSHFSGDAAI PAEQPVTKEI RPAGEETAAN QHVFMQEDEM ASWLHYPLEE PSFDRDLYAD 120 LLYPPASCAP VYAAPTTAAP PREIRPPVSE IRHLPMHQPP APRPPIIPPA KNADLEGAPR 180 VQNFGHFSRL PRARIEPGPS SSSQAAREST VVDSNETPMV KAESLASRVA ESVAPVSGGN 240 VGTVATGTST GNREMMTCEQ TVTSSPGGSG ASASAEPPQK PAPTATDDRK RKGRETDDTE 300 GHSEDIDLES ADTKKQARGS ATKRSRAAEV HNLSERRRRD RINEKMRALQ ELIPRCNKSD 360 KASMLDDAIE YLKSLQLQVQ MMSMGCGMVP MMYPGIQQYM PAMGMSMGMG MCMEMGMNRG 420 MVPYPPLLPG SSLPNATAAA QISPRFAMPP SFPMPPVPMP DPSRVQTSNQ PDPMLNPLIT 480 HNPNQQQIPN CADPYQQLFG LHQAQATLPL NQTVEHPINS KPSSSKDVGN PGNHQSR

Sequence ? help Back to Top

Protein Sequence Length: 537 aa Download sequence

MNHCVPDFDM DEDFNLPPTA TSSSGLTRHK KSAMGEEDIM ELLWQNGQVV VHSQNHRSFH  60
KSHFSGDAAI PAEQPVTKEI RPAGEETAAN QHVFMQEDEM ASWLHYPLEE PSFDRDLYAD  120
LLYPPASCAP VYAAPTTAAP PREIRPPVSE IRHLPMHQPP APRPPIIPPA KNADLEGAPR  180
VQNFGHFSRL PRARIEPGPS SSSQAAREST VVDSNETPMV KAESLASRVA ESVAPVSGGN  240
VGTVATGTST GNREMMTCEQ TVTSSPGGSG ASASAEPPQK PAPTATDDRK RKGRETDDTE  300
GHSEDIDLES ADTKKQARGS ATKRSRAAEV HNLSERRRRD RINEKMRALQ ELIPRCNKSD  360
KASMLDDAIE YLKSLQLQVQ MMSMGCGMVP MMYPGIQQYM PAMGMSMGMG MCMEMGMNRG  420
MVPYPPLLPG SSLPNATAAA QISPRFAMPP SFPMPPVPMP DPSRVQTSNQ PDPMLNPLIT  480
HNPNQQQIPN CADPYQQLFG LHQAQATLPL NQTVEHPINS KPSSSKDVGN PGNHQSR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	335	340	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.2	3e-63	bHLH family protein