PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019188383.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 198aa    MW: 21774 Da    PI: 6.4975
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019188383.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260118.15.1e-378106198
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrr+C+++Cv+apyf++++ p  fa+vhk+FGasn +kll +lp ++r +a+ s++yeA+ar++dP+yG+v+ i +lqqq+ +l+ae+
  XP_019188383.1   8 PCGACKFLRRRCVPECVFAPYFCSDHgPTIFAVVHKVFGASNFSKLLLQLPVHQRFAAVFSIAYEAQARMEDPIYGCVSYIIALQQQVLNLRAEV 102
                     7***********************9989*****************************************************************99 PP

          DUF260  95 allk 98 
                      +++
  XP_019188383.1 103 MEAR 106
                     8776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    
MASVAGSPCG ACKFLRRRCV PECVFAPYFC SDHGPTIFAV VHKVFGASNF SKLLLQLPVH  60
QRFAAVFSIA YEAQARMEDP IYGCVSYIIA LQQQVLNLRA EVMEARALHA QYLLNSMNAR  120
TPMLGGPPAP FPAIDQNATT PQYSVDHFND GGFWPPEMYT GEEAVPFSAE GSSMQRDSPW  180
HVGELQALAL KMTKTEPS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.17e-48LBD family protein