PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019188309.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 185aa    MW: 20182.8 Da    PI: 5.5476
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019188309.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260117.57.8e-378106198
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrr+C+++Cv++pyf++++ p+ fa++hk+FGasnv+kll +lp ++r +a+ s++yeA+ar++dP+yG+v+ i +lqqq+  l+ae+
  XP_019188309.1   8 PCGACKFLRRRCVPECVFSPYFCSDHgPAIFAAIHKVFGASNVSKLLLQLPVHQRFAAVFSIAYEAQARMEDPIYGCVSYIIALQQQVLDLRAEV 102
                     7***********************9989*****************************************************************99 PP

          DUF260  95 allk 98 
                      ++k
  XP_019188309.1 103 MEAK 106
                     8776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    
MASGASSPCG ACKFLRRRCV PECVFSPYFC SDHGPAIFAA IHKVFGASNV SKLLLQLPVH  60
QRFAAVFSIA YEAQARMEDP IYGCVSYIIA LQQQVLDLRA EVMEAKALHA QTQYLLNSMN  120
SRNQWATTTV GGPPEPFSAA DQNATNPQYS GDHFNDGGFL PPEMYTGEEA VPFPAEGSNM  180
QRDSP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.13e-51LBD family protein