PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019188286.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ARR-B

Protein Properties

Length: 375aa MW: 41912.7 Da PI: 7.6411

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019188286.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	81	1.3e-25	191	243	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 r +Wtp+LH++Fv++v+q+ G +A+Pk+il+lm+v+ Lt+++v+SHLQkYR+ XP_019188286.1 191 LRFVWTPQLHQQFVDVVNQI-GLRNAVPKKILDLMNVPHLTRANVASHLQKYRI 243 699***************.9*****************************7 PP
2	Myb_DNA-binding	38	3.9e-12	194	242	3	48
SS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 WT+++++++vd+v+q G + +k+I m+ ++t+ ++ s++qky+ XP_019188286.1 194 VWTPQLHQQFVDVVNQIGLRnaVPKKILDLMNvPHLTRANVASHLQKYR 242 5***********************************************7 PP
3	Response_reg	54.1	9e-19	16	123	1	107
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+vdD+ + +++l+ +l +y +v + + +al++l+e + +D++l + m++++G++ll +i + +lp++++++++ + +++ + G XP_019188286.1 16 VLLVDDNATCLRILEALLLACHY-KVVKCGGAIDALRILREGKeeIDIVLSELHMSRVNGFKLLDRIIGLQIDLPVVMISSEERVDAIKKIVIQG 109 89*******************.***********998888******************99999******************* PP ESEEEESS--HHHH CS Response_reg 94 akdflsKpfdpeel 107 a ++l Kp+ +ee+ XP_019188286.1 110 ACGYLLKPVRKEEI 123 ********9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence
MNKLFSNPLF PAGVSVLLVD DNATCLRILE ALLLACHYKV VKCGGAIDAL RILREGKEEI 60 DIVLSELHMS RVNGFKLLDR IIGLQIDLPV VMISSEERVD AIKKIVIQGA CGYLLKPVRK 120 EEIKLLWQHV VRHKQQGNWG KGIRPPPLPP AAAAAGEMPP QQKSVENCES SNNNRDEDTN 180 ATATTADVKK LRFVWTPQLH QQFVDVVNQI GLRNAVPKKI LDLMNVPHLT RANVASHLQK 240 YRIQLQRDGD QKSHKKLSIH HFHYEDMVLN NEQQAVTPTV FDHLGGGDYN YVNVYNYGGL 300 CRRVRGSPTI DNILNTTTTT VDAVILQSQP YTGNNYPNQL GSASSMLRQQ DHTQYNGEEG 360 DFGVSLYDFS GTDSN

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence

MNKLFSNPLF PAGVSVLLVD DNATCLRILE ALLLACHYKV VKCGGAIDAL RILREGKEEI  60
DIVLSELHMS RVNGFKLLDR IIGLQIDLPV VMISSEERVD AIKKIVIQGA CGYLLKPVRK  120
EEIKLLWQHV VRHKQQGNWG KGIRPPPLPP AAAAAGEMPP QQKSVENCES SNNNRDEDTN  180
ATATTADVKK LRFVWTPQLH QQFVDVVNQI GLRNAVPKKI LDLMNVPHLT RANVASHLQK  240
YRIQLQRDGD QKSHKKLSIH HFHYEDMVLN NEQQAVTPTV FDHLGGGDYN YVNVYNYGGL  300
CRRVRGSPTI DNILNTTTTT VDAVILQSQP YTGNNYPNQL GSASSMLRQQ DHTQYNGEEG  360
DFGVSLYDFS GTDSN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	2e-62	ARR-B family protein