PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019188030.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TALE

Protein Properties

Length: 338aa MW: 38034.2 Da PI: 5.3756

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019188030.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29	1.9e-09	270	302	23	55
SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp++ee+ +L++ +gL+++q+ +WF N+R ++ XP_019188030.1 270 PYPTEEEKNKLSEATGLDQKQINNWFINQRKRH 302 8*****************************885 PP
2	ELK	36.5	1e-12	223	243	2	22
ELK 2 LKhqLlrKYsgyLgsLkqEFs 22 +K++L+rKYsgyL+sL++EF+ XP_019188030.1 223 IKEMLMRKYSGYLSSLRKEFL 243 8*******************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence
MDELYGIHSV LAPSNAPSNN NNNVFSLGVD DIHHHHNHHH HHHHHLLVTS SNDNYYNSDE 60 NSKGGGGGVE MMSDVVKAQI ASHPLYPNLV SAYIQCRKVA APPEMAALLE ELSKVTQPIT 120 TAEIGADPEL DEFMESYCEV LYKYKEELSK PFDEAKTFLS SIESQLSNLC KDTFPTTSFN 180 SYHSGVLSDE AGGTSEEDLS CGEVEVAESQ EYLNNNSEGD QQIKEMLMRK YSGYLSSLRK 240 EFLKKRKKGK LPKDARVALL DWWNSHYRWP YPTEEEKNKL SEATGLDQKQ INNWFINQRK 300 RHWRPSEDMR FALMEGVSGD VAGSMFFDAG GGTGNLGI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	238	247	LRKEFLKKRK
2	244	248	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23380.1	8e-70	TALE family protein