PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019188029.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TALE

Protein Properties

Length: 357aa MW: 39990.3 Da PI: 5.2536

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019188029.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.9	2e-09	289	321	23	55
SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp++ee+ +L++ +gL+++q+ +WF N+R ++ XP_019188029.1 289 PYPTEEEKNKLSEATGLDQKQINNWFINQRKRH 321 8*****************************885 PP
2	ELK	36.4	1.1e-12	242	262	2	22
ELK 2 LKhqLlrKYsgyLgsLkqEFs 22 +K++L+rKYsgyL+sL++EF+ XP_019188029.1 242 IKEMLMRKYSGYLSSLRKEFL 262 8*******************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence
MDELYGIHSV LAPSNAPSNN NNNVFSLGVD DIHHHHNHHH QSSMMNGGIV ISGDEGQLQG 60 QHHHHHHLLV TSSNDNYYNS DENSKGGGGG VEMMSDVVKA QIASHPLYPN LVSAYIQCRK 120 VAAPPEMAAL LEELSKVTQP ITTAEIGADP ELDEFMESYC EVLYKYKEEL SKPFDEAKTF 180 LSSIESQLSN LCKDTFPTTS FNSYHSGDEA GGTSEEDLSC GEVEVAESQE YLNNNSEGDQ 240 QIKEMLMRKY SGYLSSLRKE FLKKRKKGKL PKDARVALLD WWNSHYRWPY PTEEEKNKLS 300 EATGLDQKQI NNWFINQRKR HWRPSEDMRF ALMEGVSGDV AGSMFFDAGG GTGNLGI

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence

MDELYGIHSV LAPSNAPSNN NNNVFSLGVD DIHHHHNHHH QSSMMNGGIV ISGDEGQLQG  60
QHHHHHHLLV TSSNDNYYNS DENSKGGGGG VEMMSDVVKA QIASHPLYPN LVSAYIQCRK  120
VAAPPEMAAL LEELSKVTQP ITTAEIGADP ELDEFMESYC EVLYKYKEEL SKPFDEAKTF  180
LSSIESQLSN LCKDTFPTTS FNSYHSGDEA GGTSEEDLSC GEVEVAESQE YLNNNSEGDQ  240
QIKEMLMRKY SGYLSSLRKE FLKKRKKGKL PKDARVALLD WWNSHYRWPY PTEEEKNKLS  300
EATGLDQKQI NNWFINQRKR HWRPSEDMRF ALMEGVSGDV AGSMFFDAGG GTGNLGI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	257	266	LRKEFLKKRK
2	263	267	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23380.1	1e-69	TALE family protein