PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019187983.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C3H

Protein Properties

Length: 643aa MW: 70914.5 Da PI: 6.9634

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019187983.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.7	7.2e-07	278	299	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f+ G C++Gd C +aHg XP_019187983.1 278 PCPEFRNKGACRRGDMCEYAHG 299 8********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 643 aa Download sequence
MNLNHLMVET EDTFASLLEF AANNDVQGIE RWIERDPSGV DEVGLWYGRR NGSKLMVLEH 60 RTPLMVAANY GSIDVLRLIL SLPEVDVNRW CGRDKSTALH CAASGGSLNC VDTVKLLLAA 120 GADPKLVDAN GNRPIDVIVS QNLQDMRLSL ENLLRIDAVG EVLTARSGSG SNSPPLSPSP 180 GNQSASCSSG SVSSPKSEEK FNDPPGFSMP ERKEYPVDPS LPDIKNSIYS SDEFRMFSFK 240 IRPCSRAYSH DWTECPFLHP GENARRRDPR KYHYSCVPCP EFRNKGACRR GDMCEYAHGV 300 FESWLHPAQY RTRLCKDGTK CNRRVCFFAH TQDELRPLYV PSPTSNAIEF AAAMGLIPGS 360 PSPFTPPISP SKNGIPNMGW PQQNVPALHL PGGSRLRSSF HVRDIPLEEL NMLPDFDVQR 420 QQISRSSIST SSFNRSESSS PGYSDQALPK SCFSPTHKSA VLHQFQLLSP INNNTNSPPK 480 SADNPLLQTS FGVSSPGRTM SPRVMDPVSP LPSHVSLLSH HEKQQQFRSL SFNSSAAVDS 540 WPKWDFSGSK PTRVVDSEPF GKLRRSSSSF EQANNGEEPD LSWVQRLVKE SPRETTKDKS 600 ANAIAIAGAS VEGSPSNSPI EHIDQSELSA WLEQVQLGQL LAQ

Sequence ? help Back to Top

Protein Sequence Length: 643 aa Download sequence

MNLNHLMVET EDTFASLLEF AANNDVQGIE RWIERDPSGV DEVGLWYGRR NGSKLMVLEH  60
RTPLMVAANY GSIDVLRLIL SLPEVDVNRW CGRDKSTALH CAASGGSLNC VDTVKLLLAA  120
GADPKLVDAN GNRPIDVIVS QNLQDMRLSL ENLLRIDAVG EVLTARSGSG SNSPPLSPSP  180
GNQSASCSSG SVSSPKSEEK FNDPPGFSMP ERKEYPVDPS LPDIKNSIYS SDEFRMFSFK  240
IRPCSRAYSH DWTECPFLHP GENARRRDPR KYHYSCVPCP EFRNKGACRR GDMCEYAHGV  300
FESWLHPAQY RTRLCKDGTK CNRRVCFFAH TQDELRPLYV PSPTSNAIEF AAAMGLIPGS  360
PSPFTPPISP SKNGIPNMGW PQQNVPALHL PGGSRLRSSF HVRDIPLEEL NMLPDFDVQR  420
QQISRSSIST SSFNRSESSS PGYSDQALPK SCFSPTHKSA VLHQFQLLSP INNNTNSPPK  480
SADNPLLQTS FGVSSPGRTM SPRVMDPVSP LPSHVSLLSH HEKQQQFRSL SFNSSAAVDS  540
WPKWDFSGSK PTRVVDSEPF GKLRRSSSSF EQANNGEEPD LSWVQRLVKE SPRETTKDKS  600
ANAIAIAGAS VEGSPSNSPI EHIDQSELSA WLEQVQLGQL LAQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein