PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019187464.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

G2-like

Protein Properties

Length: 414aa MW: 46274.8 Da PI: 7.6919

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019187464.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.2	3.7e-33	45	99	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt++LHerFveav+qLGG++kAtPk++l+ m+++gLtl+h+kSHLQkYRl XP_019187464.1 45 KPRLKWTQDLHERFVEAVNQLGGADKATPKSVLKQMGIQGLTLYHLKSHLQKYRL 99 79****************************************************8 PP
2	Myb_DNA-binding	62.6	7.7e-20	47	98	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r++WT++++e++v+av+qlGg t+k++ + mg +g+tl+++ks++qky+ XP_019187464.1 47 RLKWTQDLHERFVEAVNQLGGAdkaTPKSVLKQMGiQGLTLYHLKSHLQKYR 98 89****************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence
MYHHHRQGKS MHPSTNMLMP PERHLFMQGE NGHGDSGLVL STDAKPRLKW TQDLHERFVE 60 AVNQLGGADK ATPKSVLKQM GIQGLTLYHL KSHLQKYRLS KNLHGHANSS SNKAMSSGMD 120 AATGSDKIPE ANGNHINSAN IGPLANTNLP ISEAIQIQIE VQRRLHEQLE VQRHLQLRIE 180 AQGKYLQAVL EKAQETLGRQ DLGKMGLEAA KAQLSELVSK VSNQCLNSAF SGIKELPGFC 240 QQQAQATQPT DCSLDSCLTS SEGSLRDHEM RNSQMGLRSL NFGAHMESTD LYNETRLKQT 300 EFRWCDDIWE NRKYLSKMDE ETKNNGLSVS TGLQGGKWNG NSNYSDRRFT GTDADVKLFA 360 QAVDRSDTSK PEKQKTSQEY KLPYFGPKLD LNTDDKTDVA SSCKQLDLNG FSWN

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence

MYHHHRQGKS MHPSTNMLMP PERHLFMQGE NGHGDSGLVL STDAKPRLKW TQDLHERFVE  60
AVNQLGGADK ATPKSVLKQM GIQGLTLYHL KSHLQKYRLS KNLHGHANSS SNKAMSSGMD  120
AATGSDKIPE ANGNHINSAN IGPLANTNLP ISEAIQIQIE VQRRLHEQLE VQRHLQLRIE  180
AQGKYLQAVL EKAQETLGRQ DLGKMGLEAA KAQLSELVSK VSNQCLNSAF SGIKELPGFC  240
QQQAQATQPT DCSLDSCLTS SEGSLRDHEM RNSQMGLRSL NFGAHMESTD LYNETRLKQT  300
EFRWCDDIWE NRKYLSKMDE ETKNNGLSVS TGLQGGKWNG NSNYSDRRFT GTDADVKLFA  360
QAVDRSDTSK PEKQKTSQEY KLPYFGPKLD LNTDDKTDVA SSCKQLDLNG FSWN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18240.1	1e-134	G2-like family protein